Sequence Similarity Clusters for the Entities in PDB 1PDK

Entity #1 | Chains: A
PROTEIN (CHAPERONE PROTEIN PAPD) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 11 3505
95 % 10 15 2932 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 10 15 2975
70 % 10 15 2938
50 % 10 15 2893
40 % 10 15 2841
30 % 26 42 611
Entity #2 | Chains: B
PROTEIN (PROTEIN PAPK) protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66286
95 % 1 1 45848
90 % 1 1 43448
70 % 1 1 38152
50 % 1 1 32457
40 % 1 1 28626
30 % 1 1 24267

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures