Sequence Similarity Clusters for the Entities in PDB 1PDK

Entity #1 | Chains: A
PROTEIN (CHAPERONE PROTEIN PAPD) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 11 3362
95 % 10 15 2821 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 10 15 2865
70 % 10 15 2831
50 % 10 15 2786
40 % 10 15 2741
30 % 26 42 595
Entity #2 | Chains: B
PROTEIN (PROTEIN PAPK) protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64180
95 % 1 1 44469
90 % 1 1 42204
70 % 1 1 37100
50 % 1 1 31590
40 % 1 1 27871
30 % 1 1 23644

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.