Sequence Similarity Clusters for the Entities in PDB 1PDK

Entity #1 | Chains: A
PROTEIN (CHAPERONE PROTEIN PAPD) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 11 3446
95 % 10 15 2887 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 10 15 2929
70 % 10 15 2896
50 % 10 15 2852
40 % 10 15 2802
30 % 26 42 604
Entity #2 | Chains: B
PROTEIN (PROTEIN PAPK) protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65437
95 % 1 1 45296
90 % 1 1 42945
70 % 1 1 37724
50 % 1 1 32102
40 % 1 1 28307
30 % 1 1 23997

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures