Sequence Similarity Clusters for the Entities in PDB 1PDJ

Entity #1 | Chains: D,E,F
Baseplate structural protein Gp27 protein, length: 391 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 7840
95 % 5 5 7917
90 % 5 5 7844
70 % 5 5 7596
50 % 5 5 6990
40 % 5 5 6461
30 % 5 5 5654

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures