Sequence Similarity Clusters for the Entities in PDB 1PDG

Entity #1 | Chains: A,B,C
PLATELET-DERIVED GROWTH FACTOR BB protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 10395
95 % 4 4 10394 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.2
PDBFlex
90 % 4 4 10255
70 % 4 4 9724
50 % 4 4 8823
40 % 4 4 8081
30 % 4 4 7114

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.