Sequence Similarity Clusters for the Entities in PDB 1PDG

Entity #1 | Chains: A,B,C
PLATELET-DERIVED GROWTH FACTOR BB protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 10837
95 % 4 4 10840 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.2
PDBFlex
90 % 4 4 10691
70 % 4 4 10148
50 % 4 4 9187
40 % 4 4 8404
30 % 4 4 7403

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures