Sequence Similarity Clusters for the Entities in PDB 1PDA

Entity #1 | Chains: A
PORPHOBILINOGEN DEAMINASE protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 17823
95 % 2 5 16507 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 2 5 16130
70 % 2 6 13197
50 % 4 11 6386
40 % 5 16 3311
30 % 5 16 3048

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures