Sequence Similarity Clusters for the Entities in PDB 1PDA

Entity #1 | Chains: A
PORPHOBILINOGEN DEAMINASE protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57528
95 % 2 5 14571 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 2 5 14339
70 % 2 6 11425
50 % 2 6 10249
40 % 5 16 3054
30 % 5 16 2865

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures