Sequence Similarity Clusters for the Entities in PDB 1PD7

Entity #1 | Chains: A
Sin3b protein protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 35573
95 % 1 2 30373
90 % 1 2 29143
70 % 1 2 26184
50 % 4 6 9929
40 % 4 6 8966
30 % 7 9 5780
Entity #2 | Chains: B
Mad1 protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53840
95 % 1 1 44312
90 % 1 1 42146
70 % 1 1 37153
50 % 1 1 31532
40 % 1 1 27615
30 % 1 1 23057

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures