Sequence Similarity Clusters for the Entities in PDB 1PD7

Entity #1 | Chains: A
Sin3b protein protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 48834
95 % 1 2 36421
90 % 1 2 34762
70 % 1 2 30883
50 % 4 6 11201
40 % 4 6 10152
30 % 4 6 8845
Entity #2 | Chains: B
Mad1 protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 76330
95 % 1 1 53232
90 % 1 1 50457
70 % 1 1 44140
50 % 1 1 37663
40 % 1 1 33230
30 % 1 1 28218

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures