Sequence Similarity Clusters for the Entities in PDB 1PD2

Entity #1 | Chains: 1,2
HEMATOPOIETIC PROSTAGLANDIN D SYNTHASE protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41952
95 % 1 1 31865 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 1 30465
70 % 21 22 686
50 % 21 22 733
40 % 21 22 767
30 % 179 255 49

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures