Sequence Similarity Clusters for the Entities in PDB 1PD1

Entity #1 | Chains: A
Protein transport protein Sec24 protein, length: 810 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 25542
95 % 2 3 21735 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 2 3 21103
70 % 2 3 19373
50 % 2 3 16833
40 % 2 3 15024
30 % 10 26 2052
Entity #2 | Chains: B
DxE cargo sorting signal peptide of yeast Sys1 protein protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures