Sequence Similarity Clusters for the Entities in PDB 1PD1

Entity #1 | Chains: A
Protein transport protein Sec24 protein, length: 810 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 24763
95 % 2 3 21137 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 2 3 20542
70 % 2 3 18866
50 % 2 3 16411
40 % 2 3 14660
30 % 10 26 1984
Entity #2 | Chains: B
DxE cargo sorting signal peptide of yeast Sys1 protein protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.