Sequence Similarity Clusters for the Entities in PDB 1PD1

Entity #1 | Chains: A
Protein transport protein Sec24 protein, length: 810 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 25062
95 % 2 3 21376 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 2 3 20772
70 % 2 3 19076
50 % 2 3 16583
40 % 2 3 14807
30 % 10 26 2008
Entity #2 | Chains: B
DxE cargo sorting signal peptide of yeast Sys1 protein protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures