Sequence Similarity Clusters for the Entities in PDB 1PD0

Entity #1 | Chains: A
Protein transport protein Sec24 protein, length: 810 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 26978
95 % 3 3 23717 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 3 3 22957
70 % 3 3 20889
50 % 3 3 17966
40 % 3 3 15889
30 % 11 26 2123
Entity #2 | Chains: B
COPII-binding peptide of the integral membrane protein SED5 protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures