Sequence Similarity Clusters for the Entities in PDB 1PD0

Entity #1 | Chains: A
Protein transport protein Sec24 protein, length: 810 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 24146
95 % 3 3 20595 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 3 3 20025
70 % 3 3 18448
50 % 3 3 16067
40 % 3 3 14357
30 % 11 26 1937
Entity #2 | Chains: B
COPII-binding peptide of the integral membrane protein SED5 protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.