Sequence Similarity Clusters for the Entities in PDB 1PD0

Entity #1 | Chains: A
Protein transport protein Sec24 protein, length: 810 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 25339
95 % 3 3 21586
90 % 3 3 20965
70 % 3 3 19250
50 % 3 3 16736
40 % 3 3 14941
30 % 11 26 2030
Entity #2 | Chains: B
COPII-binding peptide of the integral membrane protein SED5 protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures