Sequence Similarity Clusters for the Entities in PDB 1PCR

Entity #1 | Chains: L
PHOTOSYNTHETIC REACTION CENTER protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 90 327
95 % 40 97 364
90 % 40 97 387
70 % 40 97 427
50 % 57 129 375
40 % 57 129 407
30 % 57 129 413
Entity #2 | Chains: M
PHOTOSYNTHETIC REACTION CENTER protein, length: 307 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 56 633
95 % 40 97 365
90 % 40 97 388
70 % 40 97 429
50 % 57 129 378
40 % 57 129 409
30 % 57 129 416
Entity #3 | Chains: H
PHOTOSYNTHETIC REACTION CENTER protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 40 96 288
95 % 40 97 367 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.6
PDBFlex
90 % 40 97 391
70 % 40 97 431
50 % 40 97 504
40 % 57 129 414
30 % 57 129 420

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures