Sequence Similarity Clusters for the Entities in PDB 1PBY

Entity #1 | Chains: A
quinohemoprotein amine dehydrogenase 60 kDa subunit protein, length: 489 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 32106
95 % 1 2 26119 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 2 25248
70 % 1 2 22941
50 % 1 2 19828
40 % 1 4 11601
30 % 1 4 10089
Entity #2 | Chains: B
quinohemoprotein amine dehydrogenase 40 kDa subunit protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 35295
95 % 1 2 27966 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 2 27015
70 % 1 2 24435
50 % 1 2 20997
40 % 1 2 18575
30 % 1 4 10429
Entity #3 | Chains: C
quinohemoprotein amine dehydrogenase 9 kDa subunit protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 48057
95 % 1 2 35900 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 2 34299
70 % 1 2 30508
50 % 1 4 16067
40 % 1 4 14337
30 % 1 4 12265

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.