Sequence Similarity Clusters for the Entities in PDB 1PBY

Entity #1 | Chains: A
quinohemoprotein amine dehydrogenase 60 kDa subunit protein, length: 489 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 44987
95 % 1 2 37529 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 2 35803
70 % 1 2 31791
50 % 1 2 27043
40 % 1 4 14714
30 % 1 4 12330
Entity #2 | Chains: B
quinohemoprotein amine dehydrogenase 40 kDa subunit protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 36281
95 % 1 2 37528 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 2 35802
70 % 1 2 31790
50 % 1 2 27042
40 % 1 2 23710
30 % 1 4 12329
Entity #3 | Chains: C
quinohemoprotein amine dehydrogenase 9 kDa subunit protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 32658
95 % 1 2 28205 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 2 27112
70 % 1 2 24466
50 % 1 4 16906
40 % 1 4 14939
30 % 1 4 12510

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures