Sequence Similarity Clusters for the Entities in PDB 1PBY

Entity #1 | Chains: A
quinohemoprotein amine dehydrogenase 60 kDa subunit protein, length: 489 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 32807
95 % 1 2 26651 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 2 25745
70 % 1 2 23359
50 % 1 2 20179
40 % 1 4 11820
30 % 1 4 10278
Entity #2 | Chains: B
quinohemoprotein amine dehydrogenase 40 kDa subunit protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 36076
95 % 1 2 28532 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 2 27542
70 % 1 2 24878
50 % 1 2 21370
40 % 1 2 18892
30 % 1 4 10630
Entity #3 | Chains: C
quinohemoprotein amine dehydrogenase 9 kDa subunit protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 49045
95 % 1 2 36594 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 2 34929
70 % 1 2 31033
50 % 1 4 16378
40 % 1 4 14601
30 % 1 4 12489

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures