Sequence Similarity Clusters for the Entities in PDB 1PBX

Entity #1 | Chains: A
HEMOGLOBIN (CARBONMONOXY) (ALPHA CHAIN) protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 12 2795
95 % 16 19 2015 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 16 19 2062
70 % 25 28 1183
50 % 554 754 4
40 % 559 759 8
30 % 1005 1226 8
Entity #2 | Chains: B
HEMOGLOBIN (CARBONMONOXY) (BETA CHAIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 12 2794
95 % 9 12 3454 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.8
PDBFlex
90 % 15 18 2255
70 % 21 24 1433
50 % 555 754 4
40 % 560 759 8
30 % 1006 1226 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures