Sequence Similarity Clusters for the Entities in PDB 1PBX

Entity #1 | Chains: A
HEMOGLOBIN (CARBONMONOXY) (ALPHA CHAIN) protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 12 3166
95 % 16 19 2068 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 16 19 2115
70 % 25 28 1213
50 % 555 755 4
40 % 560 760 7
30 % 1028 1299 6
Entity #2 | Chains: B
HEMOGLOBIN (CARBONMONOXY) (BETA CHAIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 12 3167
95 % 9 12 3484 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.8
PDBFlex
90 % 15 18 2267
70 % 21 24 1433
50 % 556 755 4
40 % 561 760 7
30 % 1029 1299 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures