Sequence Similarity Clusters for the Entities in PDB 1PBQ

Entity #1 | Chains: A,B
N-methyl-D-aspartate Receptor Subunit 1 protein, length: 292 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 22 1772
95 % 18 34 1441 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.4
PDBFlex
90 % 18 34 1468
70 % 18 34 1466
50 % 18 34 1524
40 % 18 34 1539
30 % 41 72 690

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.