Sequence Similarity Clusters for the Entities in PDB 1PB3

Entity #1 | Chains: A
Isocitrate dehydrogenase [NADP] protein, length: 416 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 21 2621
95 % 2 35 1555 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.0
PDBFlex
90 % 2 35 1578
70 % 4 38 1333
50 % 5 48 923
40 % 5 48 933
30 % 14 134 222

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3VMK 1 A, B 3-isopropylmalate dehydrogenase 43661 1.1.1.85 | Details
2 3VMJ 1 A 3-isopropylmalate dehydrogenase 70863 1.1.1.85 | Details
3 3VML 1 A 3-isopropylmalate dehydrogenase chimera protein of 3-isopropylmalate dehydrogenase from Shewanella oneidensis MR-1 (UNP Q8E9N3 residues 2-68), 3-isopropylmalate dehydrogenase from Shewanella benthica DB21 MT-2 (UNP D2YZL2 residues 69-328), and 3-isopropylmalate dehydrogenase from Shewanella oneidensis MR-1 (UNP Q8E9N3 residues 329-364) 70863 1.1.1.85 | Details
4 3WZY 1 A 3-isopropylmalate dehydrogenase 70863 1.1.1.85 | Details
5 3TY4 1 A, B Probable homoisocitrate dehydrogenase 4896 1.1.1.87 | Details
6 1HQS 1 A, B ISOCITRATE DEHYDROGENASE 1423 1.1.1.42 | Details
7 4XXV 1 A, B 3-isopropylmalate dehydrogenase 57975 1.1.1.85 | Details
8 6C0E 1 A, B Isocitrate dehydrogenase 446 1.1.1.42 | Details
9 1PB1 1 A Isocitrate dehydrogenase [NADP] wildtype 562 1.1.1.1 | Details 1.1.1.42 | Details
10 4IWH 1 A, B 3-isopropylmalate dehydrogenase 57975 1.1.1.85 | Details
11 3DMS 1 A Isocitrate dehydrogenase [NADP] 28450 1.1.1.42 | Details
12 3VKZ 1 A 3-isopropylmalate dehydrogenase 70863 1.1.1.85 | Details
13 3VL3 1 A 3-isopropylmalate dehydrogenase 70863 1.1.1.85 | Details
14 1PB3 1 A Isocitrate dehydrogenase [NADP] wildtype 562 1.1.1.1 | Details 1.1.1.42 | Details
15 1W0D 1 A, B, C, D 3-ISOPROPYLMALATE DEHYDROGENASE ROSSMAN FOLD 1773 1.1.1.85 | Details
16 3WZX 1 A 3-isopropylmalate dehydrogenase 70863 1.1.1.85 | Details
17 3WZV 1 A 3-isopropylmalate dehydrogenase 70863 1.1.1.85 | Details
18 5HN3 1 A Homoisocitrate dehydrogenase 311400
19 4AJS 1 A ISOCITRATE DEHYDROGENASE [NADP] 562 1.1.1.1 | Details 1.1.1.42 | Details
20 2Y3Z 1 A 3-ISOPROPYLMALATE DEHYDROGENASE ADDITIONAL AMINO ACIDS- N-TERMINAL MAS. C- TERMINAL AAALEHHHHHH 274 1.1.1.85 | Details
21 5J34 1 A, B, C, D 3-isopropylmalate dehydrogenase 2, chloroplastic 3702 1.1.1.85 | Details
22 3WZW 1 A 3-isopropylmalate dehydrogenase 70863 1.1.1.85 | Details
23 3VL4 1 A 3-isopropylmalate dehydrogenase 70863 1.1.1.85 | Details
24 4AJA 1 A NADP ISOCITRATE DEHYDROGENASE 562 1.1.1.1 | Details 1.1.1.42 | Details
25 1CNZ 1 A, B PROTEIN (3-ISOPROPYLMALATE DEHYDROGENASE) 90371
26 4AJB 1 A NADP ISOCITRATE DEHYDROGENASE 562 1.1.1.1 | Details 1.1.1.42 | Details
27 5J32 1 A, B, C, D 3-isopropylmalate dehydrogenase 2, chloroplastic 3702 1.1.1.85 | Details
28 1P8F 1 A Isocitrate dehydrogenase [NADP] Full Length 562 1.1.1.1 | Details 1.1.1.42 | Details
29 4F7I 1 A, B, C, D 3-isopropylmalate dehydrogenase 274 1.1.1.85 | Details
30 3VL2 1 A 3-isopropylmalate dehydrogenase 70863 1.1.1.85 | Details
31 2D4V 1 A, B, C, D isocitrate dehydrogenase 930
32 3TY3 1 A, B Probable homoisocitrate dehydrogenase 4896 1.1.1.87 | Details
33 3UDU 1 A, B, C, D, E, F, G, H 3-isopropylmalate dehydrogenase 197 1.1.1.85 | Details
34 1ISO 1 A ISOCITRATE DEHYDROGENASE 562 1.1.1.1 | Details 1.1.1.42 | Details
35 1AI3 1 A ISOCITRATE DEHYDROGENASE 562 1.1.1.1 | Details 1.1.1.42 | Details
36 1VLC 1 A 3-isopropylmalate dehydrogenase 2336 1.1.1.85 | Details
37 4AJ3 1 A NADP ISOCITRATE DEHYDROGENASE 562 1.1.1.1 | Details 1.1.1.42 | Details
38 4BNP 1 A ISOCITRATE DEHYDROGENASE [NADP] 562 1.1.1.1 | Details 1.1.1.42 | Details
39 1AI2 1 A ISOCITRATE DEHYDROGENASE 562 1.1.1.1 | Details 1.1.1.42 | Details
40 1X0L 1 A, B Homoisocitrate dehydrogenase 274 1.1.1.87 | Details
41 1XAA 1 A 3-ISOPROPYLMALATE DEHYDROGENASE LOW TEMPERATURE (100K) STRUCTURE 274 1.1.1.85 | Details
42 1XAB 1 A 3-ISOPROPYLMALATE DEHYDROGENASE LOW TEMPERATURE (150K) STRUCTURE 274 1.1.1.85 | Details
43 4WUO 1 A, B 3-isopropylmalate dehydrogenase 274 1.1.1.85 | Details
44 1CM7 1 A, B PROTEIN (3-ISOPROPYLMALATE DEHYDROGENASE) 562
45 3VL6 1 A 3-isopropylmalate dehydrogenase 70863 1.1.1.85 | Details
46 1A05 1 A, B 3-ISOPROPYLMALATE DEHYDROGENASE 920 1.1.1.85 | Details
47 1HJ6 1 A ISOCITRATE DEHYDROGENASE 562 1.1.1.1 | Details 1.1.1.42 | Details
48 1CW4 1 A ISOCITRATE DEHYDROGENASE 562 1.1.1.1 | Details 1.1.1.42 | Details
49 3FLK 1 A, B, C, D Tartrate dehydrogenase/decarboxylase 303 1.1.1.93 | Details 4.1.1.73 | Details
50 1G2U 1 A 3-ISOPROPYLMALATE DEHYDROGENASE 274 1.1.1.85 | Details
51 2G4O 1 A, B, C, D 3-isopropylmalate dehydrogenase 1773 1.1.1.85 | Details
52 1CW1 1 A ISOCITRATE DEHYDROGENASE 562 1.1.1.1 | Details 1.1.1.42 | Details
53 3VL7 1 A 3-isopropylmalate dehydrogenase 70863 1.1.1.85 | Details
54 1IDM 1 A 3-ISOPROPYLMALATE DEHYDROGENASE 274 1.1.1.85 | Details
55 1XAD 1 A 3-ISOPROPYLMALATE DEHYDROGENASE 2T2M6T S82R CHIMERA BETWEEN BACILLUS SUBTILIS (M) AND THERMUS THERMOPHILUS (T) FROM N-TERMINAL 20% T MIDDLE 20% M RESIDUAL 60% T ORIGINAL 2T2M6T HAD BEEN MUTATED AT S82R. LOW TEMPERATURE (150K) STRUCTURE. 274 1.1.1.85 | Details
56 1XAC 1 A 3-ISOPROPYLMALATE DEHYDROGENASE 2T2M6T S82R CHIMERA IPMDH BETWEEN BACILLUS SUBTILIS (M) AND THERMUS THERMOPHILUS (T) FROM N-TERMINAL 20% T MIDDLE 20% M RESIDUAL 60% T ORIGINAL 2T2M6T HAD BEEN MUTATED AT S82R. LOW TEMPERATURE (100K) STRUCTURE. 274 1.1.1.85 | Details
57 1IPD 1 A 3-ISOPROPYLMALATE DEHYDROGENASE 274 1.1.1.85 | Details
58 2Y41 1 A, B 3-ISOPROPYLMALATE DEHYDROGENASE ADDITIONAL AMINO ACIDS- N-TERMINAL MAS. C- TERMINAL AAALEHHHHHH 274 1.1.1.85 | Details
59 3R8W 1 A, B, C, D 3-isopropylmalate dehydrogenase 2, chloroplastic 3702 1.1.1.85 | Details
60 1GC9 1 A 3-ISOPROPYLMALATE DEHYDROGENASE 274 1.1.1.85 | Details
61 4Y1P 1 A, B 3-isopropylmalate dehydrogenase 2285 1.1.1.85 | Details
62 4AJC 1 A NADP ISOCITRATE DEHYDROGENASE 562 1.1.1.1 | Details 1.1.1.42 | Details
63 1WAL 1 A PROTEIN (3-ISOPROPYLMALATE DEHYDROGENASE) 274
64 3UDO 1 A 3-isopropylmalate dehydrogenase 197 1.1.1.85 | Details
65 2E0C 1 A, B 409aa long hypothetical NADP-dependent isocitrate dehydrogenase 111955 1.1.1.42 | Details
66 1OSJ 1 A, B 3-ISOPROPYLMALATE DEHYDROGENASE 274 1.1.1.85 | Details
67 4YB4 1 A, B, C, D Homoisocitrate dehydrogenase 274 1.1.1.87 | Details
68 1TYO 1 A, B isocitrate dehydrogenase 56636 1.1.1.42 | Details
69 7ICD 1 A ISOCITRATE DEHYDROGENASE 562 1.1.1.1 | Details 1.1.1.42 | Details
70 1CW7 1 A ISOCITRATE DEHYDROGENASE 562 1.1.1.1 | Details 1.1.1.42 | Details
71 1SJS 1 A ISOCITRATE DEHYDROGENASE 562 1.1.1.1 | Details 1.1.1.42 | Details
72 8ICD 1 A ISOCITRATE DEHYDROGENASE 562 1.1.1.1 | Details 1.1.1.42 | Details
73 1IDC 1 A ISOCITRATE DEHYDROGENASE RATE-LIMITED ENOLATE INTERMEDIATE 562 1.1.1.1 | Details 1.1.1.42 | Details
74 4ICD 1 A PHOSPHORYLATED ISOCITRATE DEHYDROGENASE 562 1.1.1.1 | Details 1.1.1.42 | Details
75 1GC8 1 A, B 3-ISOPROPYLMALATE DEHYDROGENASE 274 1.1.1.85 | Details
76 1XGV 1 A, B Isocitrate dehydrogenase 56636 1.1.1.42 | Details
77 5ICD 1 A ISOCITRATE DEHYDROGENASE 562 1.1.1.1 | Details 1.1.1.42 | Details
78 1V94 1 A, B isocitrate dehydrogenase 56636 1.1.1.42 | Details
79 2Y42 1 A, B, C, D 3-ISOPROPYLMALATE DEHYDROGENASE ADDITIONAL AMINO ACIDS- N-TERMINAL MAS.C- TERMINAL AAALEHHHHHH 274 1.1.1.85 | Details
80 3ICD 1 A ISOCITRATE DEHYDROGENASE 562 1.1.1.1 | Details 1.1.1.42 | Details
81 9ICD 1 A ISOCITRATE DEHYDROGENASE 562 1.1.1.1 | Details 1.1.1.42 | Details
82 1HEX 1 A 3-ISOPROPYLMALATE DEHYDROGENASE 274 1.1.1.85 | Details
83 3ASJ 1 A, B, C, D Homoisocitrate dehydrogenase 274
84 4AJR 1 A ISOCITRATE DEHYDROGENASE [NADP] 562 1.1.1.1 | Details 1.1.1.42 | Details
85 1IDE 1 A ISOCITRATE DEHYDROGENASE TERNARY RATE-LIMITED MICHAELIS COMPLEX 562 1.1.1.1 | Details 1.1.1.42 | Details
86 1XKD 1 A, B isocitrate dehydrogenase 56636 1.1.1.42 | Details
87 1DR0 1 A, B 3-ISOPROPYLMALATE DEHYDROGENASE 274 1.1.1.85 | Details
88 1GRO 1 A ISOCITRATE DEHYDROGENASE 562 1.1.1.1 | Details 1.1.1.42 | Details
89 1GRP 1 A ISOCITRATE DEHYDROGENASE 562 1.1.1.1 | Details 1.1.1.42 | Details
90 5YVT 1 A Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial 9606 1.1.1.41 | Details
91 5YVT 2 B Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial 9606
92 2IV0 1 A, B ISOCITRATE DEHYDROGENASE 2234 1.1.1.42 | Details
93 2E5M 1 A, B 409aa long hypothetical NADP-dependent isocitrate dehydrogenase 111955 1.1.1.42 | Details
94 5HN6 1 A Homoisocitrate dehydrogenase 311400
95 3AH3 1 A, B, C, D Homoisocitrate dehydrogenase 274 1.1.1.87 | Details
96 6ICD 1 A ISOCITRATE DEHYDROGENASE 562 1.1.1.1 | Details 1.1.1.42 | Details
97 5HN5 1 A Homoisocitrate dehydrogenase 311400
98 5GRF 1 A Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial 9606 1.1.1.41 | Details
99 5GRF 2 B Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial 9606 1.1.1.41 | Details
100 5GRI 1 A Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial 9606 1.1.1.41 | Details
101 5GRI 2 B Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial 9606 1.1.1.41 | Details
102 1IKA 1 A ISOCITRATE DEHYDROGENASE 562 1.1.1.1 | Details 1.1.1.42 | Details
103 1IDD 1 A ISOCITRATE DEHYDROGENASE APO ENZYME 562 1.1.1.1 | Details 1.1.1.42 | Details
104 1OSI 1 A, B, C, D 3-ISOPROPYLMALATE DEHYDROGENASE 274 1.1.1.85 | Details
105 5GRE 1 A Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial 9606 1.1.1.41 | Details
106 5GRE 2 B Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial 9606 1.1.1.41 | Details
107 1DPZ 1 A, B 3-ISOPROPYLMALATE DEHYDROGENASE 274 1.1.1.85 | Details
108 1BL5 1 A ISOCITRATE DEHYDROGENASE RATE-LIMITED ENOLATE INTERMEDIATE 562 1.1.1.1 | Details 1.1.1.42 | Details
109 1IDF 1 A ISOCITRATE DEHYDROGENASE APO ENZYME 562 1.1.1.1 | Details 1.1.1.42 | Details
110 5HN4 1 A Homoisocitrate dehydrogenase 311400
111 2Y40 1 A, B 3-ISOPROPYLMALATE DEHYDROGENASE ADDITIONAL AMINO ACIDS- N-TERMINAL MAS. C- TERMINAL AAALEHHHHHH 274 1.1.1.85 | Details
112 1WPW 1 A, B 3-isopropylmalate dehydrogenase 111955 1.1.1.85 | Details
113 1DR8 1 A, B 3-ISOPROPYLMALATE DEHYDROGENASE 274 1.1.1.85 | Details
114 2DHT 1 A, B 409aa long hypothetical NADP-dependent isocitrate dehydrogenase 111955 1.1.1.42 | Details
115 2ZTW 1 A 3-isopropylmalate dehydrogenase 274 1.1.1.85 | Details
116 2AYQ 1 A, B 3-ISOPROPYLMALATE DEHYDROGENASE 1398 1.1.1.85 | Details
117 3LCB 2 C, D Isocitrate dehydrogenase [NADP] 562 1.1.1.1 | Details 1.1.1.42 | Details
118 1V53 1 A, B 3-isopropylmalate dehydrogenase 1398 1.1.1.85 | Details
119 5GRH 1 A Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial 9606 1.1.1.41 | Details
120 5GRH 2 B Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial 9606 1.1.1.41 | Details
121 5GRL 1 A Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial 9606 1.1.1.41 | Details
122 5GRL 2 B Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial 9606 1.1.1.41 | Details
123 3BLX 1 A, C, E, G, I, K, M, O Isocitrate dehydrogenase [NAD] subunit 1 4932 1.1.1.41 | Details
124 3BLX 2 B, D, F, H, J, L, N, P Isocitrate dehydrogenase [NAD] subunit 2 4932 1.1.1.41 | Details
125 1V5B 1 A, B, C, D, E, F, G, H 3-isopropylmalate dehydrogenase 1398 1.1.1.85 | Details
126 5M2E 1 A, B, C, D Isocitrate dehydrogenase [NADP] 287 1.1.1.42 | Details
127 4P69 2 C, D Isocitrate dehydrogenase [NADP] 562 1.1.1.1 | Details 1.1.1.42 | Details
128 3U1H 1 A, B 3-isopropylmalate dehydrogenase 1409 1.1.1.85 | Details
129 5J33 1 A, B, C, D, E, F, G, H 3-isopropylmalate dehydrogenase 2, chloroplastic 3702 1.1.1.85 | Details
130 3BLV 1 A, C, E, G Isocitrate dehydrogenase [NAD] subunit 1 4932 1.1.1.41 | Details
131 3BLV 2 B, D, F, H Isocitrate dehydrogenase [NAD] subunit 2 4932 1.1.1.41 | Details
132 3FMX 1 X Tartrate dehydrogenase/decarboxylase 303 1.1.1.93 | Details 4.1.1.73 | Details
133 3BLW 1 A, C, E, G, I, K, M, O Isocitrate dehydrogenase [NAD] subunit 1 4932 1.1.1.41 | Details
134 3BLW 2 B, D, F, H, J, L, N, P Isocitrate dehydrogenase [NAD] subunit 2 4932 1.1.1.41 | Details