Sequence Similarity Clusters for the Entities in PDB 1PAU

Entity #1 | Chains: A
APOPAIN protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 32 37 744
95 % 35 40 908 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 35 40 942
70 % 35 40 972
50 % 35 41 986
40 % 40 48 757
30 % 40 48 748
Entity #2 | Chains: B
APOPAIN protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 31 36 706
95 % 33 39 910 Flexibility: No
Max RMSD: 3.6, Avg RMSD: 0.4
PDBFlex
90 % 35 42 833
70 % 35 42 867
50 % 46 66 444
40 % 46 67 468
30 % 58 83 324
Entity #3 | Chains: C
ACE-ASP-GLU-VAL-ASJ protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.