Sequence Similarity Clusters for the Entities in PDB 1PAU

Entity #1 | Chains: A
APOPAIN protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 39 800
95 % 35 40 945 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 35 40 971
70 % 35 40 1007
50 % 35 41 1020
40 % 40 48 794
30 % 40 48 794
Entity #2 | Chains: B
APOPAIN protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 12 3655
95 % 47 53 623 Flexibility: No
Max RMSD: 3.6, Avg RMSD: 0.4
PDBFlex
90 % 49 56 599
70 % 49 56 642
50 % 60 80 405
40 % 60 81 428
30 % 72 97 317
Entity #3 | Chains: C
ACE-ASP-GLU-VAL-ASJ protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures