Sequence Similarity Clusters for the Entities in PDB 1PAM

Entity #1 | Chains: A,B
CYCLODEXTRIN GLUCANOTRANSFERASE protein, length: 686 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 10816
95 % 1 11 2667 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 1 11 2711
70 % 4 48 875
50 % 6 52 870
40 % 8 54 876
30 % 8 54 860

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.