Sequence Similarity Clusters for the Entities in PDB 1PAD

Entity #1 | Chains: A
PAPAIN protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 16 3398
95 % 20 24 2276 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 20 24 2343
70 % 20 24 2340
50 % 168 172 159
40 % 208 212 137
30 % 244 248 125
Entity #2 | Chains: I
ACETYL-ALA-ALA-PHE-ALA-CHLOROMETHYLKETONE INHIBITOR protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures