Sequence Similarity Clusters for the Entities in PDB 1PAD

Entity #1 | Chains: A
PAPAIN protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 16 3290
95 % 20 24 2215 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 20 24 2280
70 % 20 24 2278
50 % 168 172 153
40 % 208 212 132
30 % 244 248 124
Entity #2 | Chains: I
ACETYL-ALA-ALA-PHE-ALA-CHLOROMETHYLKETONE INHIBITOR protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.