Sequence Similarity Clusters for the Entities in PDB 1PAD

Entity #1 | Chains: A
PAPAIN protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 23 2125
95 % 20 24 2355 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 20 24 2422
70 % 20 24 2423
50 % 194 198 143
40 % 238 242 125
30 % 278 282 118
Entity #2 | Chains: I
ACETYL-ALA-ALA-PHE-ALA-CHLOROMETHYLKETONE INHIBITOR protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures