Sequence Similarity Clusters for the Entities in PDB 1PA6

Entity #1 | Chains: D
5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*AP*GP*G)-3' dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: G,H
5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3' dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Telomere-binding protein alpha subunit protein, length: 460 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 15 4381
95 % 12 15 4705 Flexibility: Low
Max RMSD: 12.1, Avg RMSD: 2.0
PDBFlex
90 % 12 15 4736
70 % 12 15 4612
50 % 12 15 4427
40 % 12 15 4176
30 % 12 15 3741
Entity #4 | Chains: B
Telomere-binding protein beta subunit protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 11 6509
95 % 9 11 6655 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 9 11 6643
70 % 9 11 6434
50 % 9 11 6002
40 % 9 11 5583
30 % 9 11 4920

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures