Sequence Similarity Clusters for the Entities in PDB 1P9U

Entity #1 | Chains: A,B,C,D,E,F
putative coronavirus nsp2 (3CL-PRO) protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 2853
95 % 3 4 3549 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 4 6 2753
70 % 4 6 2733
50 % 10 14 1470
40 % 79 119 235
30 % 79 119 245
Entity #2 | Chains: G,H
PHQ-VNSTLQ-CHLOROMETHYLKETONE INHIBITOR protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures