Sequence Similarity Clusters for the Entities in PDB 1P9U

Entity #1 | Chains: A,B,C,D,E,F
putative coronavirus nsp2 (3CL-PRO) protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 2792
95 % 3 4 3489 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 4 6 2698
70 % 4 6 2681
50 % 10 14 1452
40 % 79 119 231
30 % 79 119 242
Entity #2 | Chains: G,H
PHQ-VNSTLQ-CHLOROMETHYLKETONE INHIBITOR protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.