Sequence Similarity Clusters for the Entities in PDB 1P9M

Entity #1 | Chains: A
Interleukin-6 receptor beta chain protein, length: 299 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 35645
95 % 2 2 27951 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.5
PDBFlex
90 % 2 2 26998
70 % 2 2 24466
50 % 2 2 21035
40 % 2 2 18575
30 % 2 2 15808
Entity #2 | Chains: B
Interleukin-6 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 10 4218
95 % 9 11 4345 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.5
PDBFlex
90 % 9 11 4367
70 % 9 11 4299
50 % 9 11 4138
40 % 9 12 3731
30 % 9 12 3466
Entity #3 | Chains: C
Interleukin-6 receptor alpha chain protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60217
95 % 1 1 42011
90 % 1 1 39948
70 % 1 1 35263
50 % 1 1 30093
40 % 1 1 26549
30 % 1 1 22505

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.