Sequence Similarity Clusters for the Entities in PDB 1P9M

Entity #1 | Chains: A
Interleukin-6 receptor beta chain protein, length: 299 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 37035
95 % 2 2 29033 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.5
PDBFlex
90 % 2 2 28022
70 % 2 2 25287
50 % 2 2 21698
40 % 2 2 19154
30 % 2 2 16301
Entity #2 | Chains: B
Interleukin-6 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 10 4437
95 % 9 11 4516
90 % 9 11 4540
70 % 9 11 4463
50 % 9 11 4286
40 % 9 12 3848
30 % 9 12 3582
Entity #3 | Chains: C
Interleukin-6 receptor alpha chain protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62394
95 % 1 1 43527
90 % 1 1 41331
70 % 1 1 36364
50 % 1 1 30989
40 % 1 1 27329
30 % 1 1 23172

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures