Sequence Similarity Clusters for the Entities in PDB 1P9M

Entity #1 | Chains: A
Interleukin-6 receptor beta chain protein, length: 299 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 37773
95 % 2 2 29575 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.5
PDBFlex
90 % 2 2 28530
70 % 2 2 25725
50 % 2 2 22044
40 % 2 2 19451
30 % 2 2 16547
Entity #2 | Chains: B
Interleukin-6 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 10 4556
95 % 9 11 4621
90 % 9 11 4651
70 % 9 11 4563
50 % 9 11 4377
40 % 9 12 3923
30 % 9 12 3653
Entity #3 | Chains: C
Interleukin-6 receptor alpha chain protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63560
95 % 1 1 44294
90 % 1 1 42023
70 % 1 1 36951
50 % 1 1 31464
40 % 1 1 27747
30 % 1 1 23509

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures