Sequence Similarity Clusters for the Entities in PDB 1P9M

Entity #1 | Chains: A
Interleukin-6 receptor beta chain protein, length: 299 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 33916
95 % 2 2 29137 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.5
PDBFlex
90 % 2 2 27979
70 % 2 2 25205
50 % 2 2 21601
40 % 2 2 19052
30 % 3 3 13061
Entity #2 | Chains: B
Interleukin-6 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 10 5127
95 % 9 11 4715 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.4
PDBFlex
90 % 9 11 4748
70 % 9 11 4631
50 % 9 11 4448
40 % 9 12 3927
30 % 9 12 3572
Entity #3 | Chains: C
Interleukin-6 receptor alpha chain protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51417
95 % 1 1 42447
90 % 1 1 40426
70 % 1 1 35694
50 % 1 1 30313
40 % 1 1 26550
30 % 1 1 22162

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures