1P9D

High-resolution structure of the complex of HHR23A ubiquitin-like domain and the C-terminal ubiquitin-interacting motif of proteasome subunit S5a


Sequence Similarity Clusters for the Entities in PDB 1P9D

Entity #1 | Chains: S
26S proteasome non-ATPase regulatory subunit 4 protein, length: 45 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 29288
95 % 3 3 25666
90 % 3 3 24787
70 % 3 3 22434
50 % 3 3 19285
40 % 3 3 17033
30 % 3 3 14259
Entity #2 | Chains: U
UV excision repair protein RAD23 homolog A protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 27851
95 % 2 3 24531
90 % 2 3 23696
70 % 2 4 18895
50 % 2 4 16397
40 % 2 4 14560
30 % 722 737 17

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3A4R 1 A, B NFATC2-interacting protein SLD2, Ubiquitin-like domain, residues 339-412 10090
2 5TOG 1 A Polyubiquitin-B 9606
3 5NVG 1 A Polyubiquitin-B 9606
4 6FJ7 1 A Ubiquitin-like protein 311458
5 5TOF 1 A Polyubiquitin-B 9606
6 4XOF 1 A Ubiquitin 9606
7 4HRO 1 A, B Small archaeal modifier protein 1 2246
8 1WM3 1 A Ubiquitin-like protein SMT3B no N-terminal arm(residues 17-88) 9606
9 2BWF 1 A, B UBIQUITIN-LIKE PROTEIN DSK2 UBIQUITIN-LIKE DOMAIN OF DSK2 PROTEIN UBL DOMAIN, RESIDUES 1-75 4932
10 3A9J 1 A Ubiquitin 10090
11 3A9J 2 B Ubiquitin 10090
12 5GOB 1 A Ubiquitin 9606
13 5GOB 2 B D-ubiquitin 9606
14 5W46 1 A, B Polyubiquitin-B 9606
15 5GOD 1 A, B Ubiquitin 9606
16 5GOD 2 C, D D-ubiquitin 9606
17 5XVE 2 B Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9913
18 3NHE 2 B Ubiquitin 9606
19 4WJQ 1 A, C Small ubiquitin-related modifier 1 unp residues 17-97 9606
20 5DK8 1 A, B Polyubiquitin-B Ubiquitin, UNP residues 2-75 9606
21 1YJ1 1 A, B, C Ubiquitin residues 1-76
22 2UYZ 2 B SMALL UBIQUITIN-RELATED MODIFIER 1 RESIDUES 20-97 9606
23 5NL4 1 A, B, C Polyubiquitin-C 9606
24 5V1Y 2 C, D Ubiquitin 9606
25 4M0W 2 B Ubiquitin 9913
26 4Y1H 1 A Ubiquitin-40S ribosomal protein S27a K33 linked tri-Ubiquitin. 9913
27 2GBJ 1 A, B Ubiquitin 9606
28 1YIW 1 A, B, C Ubiquitin 9031
29 1OGW 1 A UBIQUITIN LEF IS (4S)-5-FLUORO-L-LEUCINE RESIDUES 1-76 9606
30 2WWZ 1 A, B UBIQUITIN 9913
31 5J4F 1 A, B Uncharacterized protein 210
32 5KYC 2 C Polyubiquitin-B UNP residues 1-76 9606
33 4IUM 2 B Ubiquitin UNP residues 1-75 9606
34 4WJO 1 A Small ubiquitin-related modifier 1 SUMO1, unp residues 17-97 9606
35 3PLU 1 A, B Ubiquitin-like modifier HUB1 4932
36 4GU2 1 A Ubiquitin 5759
37 3A9K 1 A Ubiquitin 10090
38 3A9K 2 B Ubiquitin 10090
39 4HK2 1 A, B, C, D Ubiquitin 9606
40 5KYF 2 C Polyubiquitin-B UNP residues 1-76 9606
41 1XD3 2 B, D UBC protein 9606
42 5NLF 1 A, B, C Polyubiquitin-C 9606
43 5V5H 2 B Ubiquitin variant CC.2 32630
44 4ZPZ 1 A, B Polyubiquitin-B ubiquitin, UNP residues 1-73 9606
45 6E2B 1 A, C, E, G, I, P Ubiquitin 9913
46 4WJN 1 A Small ubiquitin-related modifier 1 SUMO1, unp residues 17-97 9606
47 4UN2 1 A UBIQUITIN 9606
48 5VBT 1 A, B UBH04 32630
49 6FFA 2 B Ubiquitin-like protein ISG15 9606
50 4PIH 1 A, B Ubiquitin 9606
51 2ZCC 1 A, B, C Ubiquitin 9913
52 4PIJ 1 A, B Ubiquitin 9606
53 5NLI 1 A, B, C Polyubiquitin-C 9606
54 3PHX 2 B Ubiquitin-like protein ISG15 UNP residues 79-156 9606
55 2WYQ 1 A UV EXCISION REPAIR PROTEIN RAD23 HOMOLOG A UBIQUITIN-LIKE DOMAIN, RESIDUES 1-82 9606
56 5O6T 2 C, D Polyubiquitin-B A variant of ubiquitin identified from a phage-display library 9606
57 5KP7 2 B CurB 158786
58 5YT6 1 A, C, E, G Ubiquitin 9606
59 4V3L 2 B, D POLYUBIQUITIN-C G76 IN CHAIN B IS COVALENTLY LINKED TO K85 SIDE CHAIN IN CHAIN A. RESIDUES 77-152 9606
60 4LJO 2 B Polyubiquitin-C unp residues 77-152 9913
61 4FBJ 2 B NEDD8 9606
62 1WM2 1 A Ubiquitin-like protein SMT3B no N-terminal arm(residues 12-89) 9606
63 3BY4 2 B Ubiquitin 9606
64 6FDK 2 B Polyubiquitin-B 9606
65 5K9P 1 A Polyubiquitin-B 9606
66 3RD2 1 A NFATC2-interacting protein SUMO-like domain 9606
67 5NLJ 1 A, B, C Polyubiquitin-B 9606
68 1VJK 1 A molybdopterin converting factor, subunit 1 2261
69 5KYD 1 D Polyubiquitin-B UNP residues 1-76 9606
70 3PO0 1 A Small archaeal modifier protein 1 2246
71 4XYZ 1 A, B Polyubiquitin-C UNP residues 77-152 9913
72 3M3J 1 A, B, C, D, E, F Ubiquitin 9913
73 2ZNV 2 B, E Ubiquitin 10090
74 2ZNV 3 C, F Ubiquitin 10090
75 2GBM 1 A, B, C, D Ubiquitin 9606
76 1EUV 2 B UBITQUTIN-LIKE PROTEIN SMT3 SMT3 RESIDUES 13-98 4932
77 5OXH 1 A Ubiquitin T66V/L67N mutant 9606
78 5EMZ 1 A, C, E Polyubiquitin-B 9606
79 5EMZ 2 B, D, F Polyubiquitin-B 9606
80 6B7M 2 B, C Polyubiquitin-C 9606
81 4WJP 1 A, C Small ubiquitin-related modifier 1 unp residues 17-97 9606
82 3VUX 1 A, B, C Polyubiquitin-C Ubiquitin 9606
83 2GBN 1 A Ubiquitin 9606
84 2ZCB 1 A, B, C Ubiquitin 9606
85 5OXI 1 A, B Ubiquitin L67S mutant 9606
86 4K1R 2 B, D Polyubiquitin-C 9606
87 6HPR 2 B, D Polyubiquitin-B Ubiquitin residues 1-76 contains N-terminal GSGGS after TEV cleavage. Chain D Gly76 forms isopeptide linkage with Chain C Lys85. 9606
88 3PRP 2 B, D Ubiquitin 9606 3.4.19.12 | Details
89 4I6N 2 B, D Ubiquitin 9606
90 2ZEQ 1 A E3 ubiquitin-protein ligase parkin Ubiquitin-like domain 10090 2.3.2.31 | Details
91 3V6C 2 B Ubiquitin 9606
92 5AF5 1 A POLYUBIQUITIN-C 9606
93 5J8P 1 A ubiquitin 9606
94 5J8P 2 B D-ubiquitin 9606
95 1NDD 1 A, B, C, D PROTEIN (UBIQUITIN-LIKE PROTEIN NEDD8) HUMAN NEDD8 UBIQUITIN-LIKE PROTEIN MONOMER WITH 4 MOLECULES IN THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT 9606
96 4K7U 1 A, B, C ubiquitin UNP residues 1-76 9606 6.3.2.19 | Details
97 6EI1 2 B Polyubiquitin-B 9606
98 6FGE 2 C Polyubiquitin-B 9606
99 2J7Q 2 B, D UBIQUITIN THE C-TERMINAL GLY 76 IS REPLACED BY THE VINYLMETHYLESTER MOIETY UBIQUITIN FUSED TO VINYLMETHYLESTER, UBVME, RESIDUES 1-75 9606
100 3NS8 1 A, B Ubiquitin 9606
101 5GOJ 1 A Ubiquitin 9606
102 5GOJ 2 B D-ubiquitin 9606
103 1UBI 1 A UBIQUITIN 9606
104 2D3G 1 A, B ubiquitin 9913
105 5GOC 1 A Ubiquitin 9606
106 5GOC 2 D D-ubiquitin 9606
107 4GHJ 1 A, B Probable transcriptional regulator Transcriptional Regulator 672
108 5X3N 1 A Polyubiquitin-B UNP residues 1-76 9606
109 5XIU 2 B Ubiquitin-40S ribosomal protein S27a 10090
110 5TXK 2 B Polyubiquitin-B 9606
111 5WFI 2 C, D Ubiquitin 9606
112 1UBQ 1 A UBIQUITIN 9606
113 6B7O 2 B, C Polyubiquitin-C 9606
114 4ZFR 2 B ubiquitin unp residues 77-152 9606
115 4MSM 2 B, D Ubiquitin UNP residues 77-152 9606
116 4HJK 1 A Ubiquitin UNP residues 87-162 9606
117 6GLC 2 B Polyubiquitin-B 9606
118 3N32 1 A Ubiquitin 9606
119 5L8H 2 B Polyubiquitin-B Recombinant expression followed by chemical synthesis. 9606
120 3ONS 1 A Ubiquitin 9606
121 5XU8 2 B Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9913
122 4DWF 1 A, B HLA-B-associated transcript 3 9606
123 5KP8 2 B CurB 158786
124 3MHS 4 D Ubiquitin 9606
125 5M93 1 A, B, C Polyubiquitin-B 9606
126 6FNN 2 C, D Ubiquitin-like protein 311458
127 3K9O 2 B Ubiquitin 9606
128 3ZDM 2 C, F UBIQUITIN-LIKE PROTEIN MDY2 UBIQUITIN-LIKE DOMAIN, RESIDUES 71-151 4932
129 4K7W 1 A, B, C ubiquitin UNP residues 1-76 9606 6.3.2.19 | Details
130 2HD5 2 B Polyubiquitin residues 1-76 9913
131 5NMC 1 A, B, C Polyubiquitin-C 9606
132 5GOI 1 A, B Ubiquitin 9606
133 5GOI 2 C, D D-ubiquitin 9606
134 1WRD 2 B Ubiquitin 9913
135 5GVI 2 B ubiquitin 10090
136 5GVI 3 C ubiquitin 10090
137 4K7S 1 A, B, C ubiquitin UNP residues 1-73 9606 6.3.2.19 | Details
138 2BKR 2 B NEDDYLIN 9606
139 4WVU 1 A E3 ubiquitin-protein ligase XIAP 9606 2.3.2.27 | Details
140 3B1L 1 X E3 ubiquitin-protein ligase parkin Ubiquitin-like domain 10090 2.3.2.31 | Details
141 5CVM 2 B Polyubiquitin-B UNP residues 1-76 9606
142 2FCS 1 A, B Ubiquitin residues 1-76
143 4Q5E 2 B Polyubiquitin 4932 6.3.2.19 | Details
144 5V1Z 2 C, D Ubiquitin 9606
145 3ALB 1 A, B, C, D ubiquitin 9606
146 6GZS 2 B Polyubiquitin-B 9606
147 5D0M 3 B Polyubiquitin-B UNP residues 1-76 9606
148 5XIS 2 B, E Ubiquitin-40S ribosomal protein S27a 10090
149 5XIS 3 C, F Ubiquitin-40S ribosomal protein S27a 10090
150 4PIG 1 A, B, C, D Ubiquitin 9606
151 5X3M 1 A Polyubiquitin-B 9606
152 5X3M 2 D D-ubiquitin D-Ub-S65E-NH2 9606
153 4H2W 2 C, D Aminoacyl carrier protein 1176649
154 3D3R 1 A, B Hydrogenase assembly chaperone hypC/hupF 70863
155 5NL5 1 A, B, C Polyubiquitin-B 9606
156 6ML1 2 C, E Ubiquitin variant 15.1a This is a Ubv (ubiquitin variant) selected by phage display to bindthe USP15 USP domain with high affinity 9606
157 4MSQ 2 B, D Ubiquitin UNP residues 77-152 9606
158 6FNO 2 C, D Ubiquitin-like protein 311458
159 4WVT 1 A, B E3 ubiquitin-protein ligase XIAP 9606 2.3.2.27 | Details
160 4LDT 2 B Ubiquitin aldehyde 9606
161 4LDT 4 D Ubiquitin 9606
162 3VUW 1 A, B, C Polyubiquitin-C Ubiquitin 9606
163 3TMP 2 B, D, F, H Polyubiquitin-C Ubiquitin-like 1 9606
164 2QHO 1 A, C, E, G Ubiquitin 9913
165 3H7P 1 A Ubiquitin 9606
166 3H7P 2 B Ubiquitin 9606
167 4WZP 1 A, B, C, D, E, F, G, H ubiquitin phosphorylation at Ser65 UNP residues 1-76 9606
168 5KP6 2 B CurB 158786
169 3EHV 1 A, B, C Ubiquitin 9606 6.3.2.19 | Details
170 5GO7 1 A Ubiquitin 9606
171 5GO7 2 B D-ubiquitin 9606
172 6CPM 2 E, F Ubiquitin variant 15.1d This is a Ubv (ubiquitin variant) selected by phage display to bind the USP15 USP domain with high affinity 9606
173 1P3Q 2 U, V Ubiquitin 9913
174 2OOB 2 B Ubiquitin 9913
175 5ULF 2 B, D Ubiquitin 9606
176 5KYE 2 C, D Polyubiquitin-B UNP residues 1-76 9606
177 6ISU 2 B Ubiquitin 9606
178 6ISU 3 C Ubiquitin 9606
179 4F8C 2 B, D NEDD8 9606
180 3PLV 1 A Ubiquitin-like modifier HUB1 4932
181 5ULH 2 B Ubiquitin 9606
182 3HM3 1 A, B, C, D Ubiquitin 9606
183 5LRW 2 B, D Polyubiquitin-B Gly76 was replaced with 2-bromoethylamine 9606
184 5GOK 1 A Ubiquitin 9606
185 5GOK 2 B D-ubiquitin 9606
186 4H2V 2 C, D Aminoacyl carrier protein 1 1355477
187 4WLR 3 C Polyubiquitin-B 9606
188 3WWQ 1 A, D, G, J Ubiquitin 10090
189 3WWQ 2 B, E, H, K Ubiquitin 10090
190 5ELJ 2 B Small ubiquitin-related modifier 1 9606
191 1YQB 1 A Ubiquilin 3 Ubiquitin-like domain, residues 19-99 9606
192 5JG6 2 B, C Polyubiquitin-B 9606
193 4WVS 1 A E3 ubiquitin-protein ligase XIAP UNP residues 156-231 9606 2.3.2.27 | Details
194 6GF1 1 A, B, C Ubiquitin D N Domain 9606
195 3EFU 1 A Ubiquitin 9606
196 4Q5H 2 B Polyubiquitin 4932 6.3.2.19 | Details
197 5AF4 1 A, B, C, D, E, F, G, H UBIQUITIN ISOPEPTIDE LINKAGES BETWEEN A76 C AND B33 NZ, C76 C AND D33 NZ, E76 C AND F33 NZ 9606
198 3E56 1 A Putative uncharacterized protein UNP residues 1-88 272131
199 4V3K 2 B, E POLYUBIQUITIN-C LYS85 IN CHAINS A AND D IS COVALENTLY LINKED TO GLY76 IN CHAINS B AND E, RESPECTIVELY. RESIDUES 77-152 9606
200 4IG7 2 B Ubiquitin 9606
201 2JF5 1 A, B UBIQUITIN ISO-PEPTIDE LINK BETWEEN A-LYS63 AND B-GLY76 9606
202 5MN9 1 A, B Ubiquitin-40S ribosomal protein S27a 9913
203 5WVO 1 A, B Ubiquitin 9606
204 3V6E 2 B Ubiquitin 9606
205 1UZX 2 B UBIQUITIN 9913
206 5YDR 1 A, D Polyubiquitin-B UNP residues 1-73 9606
207 4H2U 2 C, D Aminoacyl carrier protein 1 1355477
208 5V5G 2 B, D Ubiquitin variant CC.4 32630
209 4H2Y 2 C, D Aminoacyl carrier protein 1176649
210 4H2X 3 C, D Aminoacyl carrier protein 1176649
211 1S1Q 2 B, D ubiquitin 9606
212 5JP1 2 B Small ubiquitin-related modifier 4081
213 4H2S 2 C, D Aminoacyl carrier protein 1 1355477
214 4LJP 2 B Polyubiquitin-C unp residues 77-152 9913
215 3VUY 1 A, B, C Polyubiquitin-C Ubiquitin 9606
216 3PHW 2 B, D, F, H Ubiquitin-40S ribosomal protein S27a UNP residues 1-75 9606
217 4PQT 2 B Protein UBBP4 unp residues 77-152 9606
218 4MTZ 1 A, B, C, D E3 ubiquitin-protein ligase XIAP UNP residues 10-99 9606 2.3.2.27 | Details
219 5BZ0 2 B Ubiquitin-40S ribosomal protein S27a Ubiquitin from bovine erythrocytes 9913
220 2EKE 2 C, D Ubiquitin-like protein SMT3 4932
221 2GBR 1 A, B, C Ubiquitin 9606
222 2FAZ 1 A, B Ubiquitin-like containing PHD and RING finger domains protein 1 UBIQUITIN-LIKE DOMAIN 9606 2.3.2.27 | Details
223 4XKL 1 A, C Ubiquitin 9606
224 4FJV 2 B, D Polyubiquitin-C 9606
225 5DFL 1 B Ubiquitin 9606
226 2C7N 2 B, D, F, H, J, L UBIQUITIN 9913
227 5HPS 2 B Ubiquitin variant P1.1 9606
228 5GOH 1 A Ubiquitin 9606
229 5GOH 2 D D-ubiquitin 9606
230 3RZW 2 C, D Small ubiquitin-related modifier 1 9606
231 3EJB 1 A, C, E, G Acyl carrier protein 562
232 3ZNI 4 D, H, L, P POLYUBIQUITIN-C CARBONYL CARBON OF G76 IN CHIANS D, H, L AND P FORMS AN ISOPEPTIDE LINKAGE WITH THE SIDECHAIN OF K85 IN CHAINS C, G, K AND O, RESPECTIVELY. GSGGS LINKER AT THE N- TERMINUS OF PROTEIN RESULTED FROM CLONING RESIDUES 77-152 9606
233 2VRR 2 B SMALL UBIQUITIN-RELATED MODIFIER 1 RESIDUES 20-97 9606
234 3ZO5 2 B SMALL UBIQUITIN-RELATED MODIFIER 2 RESIDUES 16-95 9606
235 5D6J 2 B Ubiquitin-like protein SMT3 UNP RESIDUES 21-94 4932
236 2G45 2 B, E Ubiquitin 9606
237 6AQR 4 D Polyubiquitin-C 9606
238 1WYW 2 B Ubiquitin-like protein SMT3C 9606
239 5MNJ 2 B, F Polyubiquitin-B gsggs linker at the N-terminus resulted from cloning. G76 in chain B is covalently linked to K85 side chain in Chain A. 9606
240 5ZQ3 2 C, D Ubiquitin 9606
241 2D07 2 B Ubiquitin-like protein SMT3B 9606
242 5ZQ4 2 C, D ubiquitin 9606
243 4GSW 1 A, B Ubiquitin 5759
244 4RF1 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-75 9606
245 1SIF 1 A ubiquitin 9606
246 5JBY 1 A, C, E ubiquitin 9606
247 5JBY 2 B, D, F D-ubiquitin 9606
248 5IFR 2 B Polyubiquitin-B 9606
249 2IBI 2 B Ubiquitin 9606
250 5L6H 2 B, D, E Ubiquitin-40S ribosomal protein S31 4932
251 6JB7 1 B Ubiquitin 9606
252 5GOG 1 A Ubiquitin 9606
253 5GOG 2 B D-ubiquitin 9606
254 2GBK 1 A, B, C, D Ubiquitin 9606
255 4AUQ 3 C, F POLYUBIQUITIN-C UBIQUITIN, RESIDUES 1-76 9606
256 4NNJ 2 B, D, E Uba1 UNP residues 1-76 4932
257 5ELU 2 B Small ubiquitin-related modifier 2 9606
258 4Z9S 1 A, B, C, D Ubiquitin-40S ribosomal protein S27a UNP RESIDUES 1-76 9913
259 6DGF 2 B Polyubiquitin-B 9606
260 2XEW 1 A, B, C, D, E, F, G, H, I, J, K, L UBIQUITIN UBIQUITIN POLYMER LINKED THROUGH LYS11 IN AN ISOPEPTIDE LINKAGE 9606
261 2WDT 2 B, D UBIQUITIN C-TERMINAL GLY76 OF WILDTYPE UBIQUITIN IS REPLACED BY A VINYL METHYLESTER MOIETY (UBVME) RESIDUES 1-75 9606
262 1XT9 2 B Neddylin 9606
263 1AAR 1 A, B DI-UBIQUITIN 9913
264 3ULQ 2 B Transcriptional regulatory protein ComA DNA Binding Domain, UNP residues 146-214 1423
265 1JE8 2 A, B, E, F Nitrate/Nitrite Response Regulator Protein NARL DNA Binding Domain (147-216) 562
266 4AP4 3 C, F UBIQUITIN C ISOPEPTIDE AMIDE LINKED TO UBCH5A (CHAIN B AND CHAIN E) RESIDUES 76-152 9606
267 3UIP 2 B Small ubiquitin-related modifier 1 UNP residues 18-97 9606
268 4UEL 2 B POLYUBIQUITIN-B GLY76 OF UBIQUITIN IS REPLACED BY GLY-AYE THAT IS COVALENTLY LINKED TO THE ACTIVE SITE CYS88 OF UCH-L5 9606
269 4II2 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 4896
270 4ZFT 2 B, D Polyubiquitin-B unp residues 77-152 9606
271 2WX0 1 A, B, E, F UBIQUITIN 9913
272 3A1Q 1 A, D Ubiquitin 10090
273 3A1Q 2 B, E Ubiquitin 10090
274 5HPL 2 C, D Ubiquitin variant R5.4 9606
275 5TR4 2 B, D Ubiquitin 9913
276 5TVQ 2 B Small ubiquitin-related modifier 2 10090
277 4BOS 2 C, E POLYUBIQUITIN-C RESIDUES 1-76 9606
278 3H7S 1 A, B Ubiquitin 9606
279 4GOC 1 A, B, C Golgi to ER traffic protein 5 4932
280 3EJE 1 A, C, E, G Acyl carrier protein 562
281 3C0R 2 B, D Ubiquitin 9606
282 5AIU 3 C, F POLYUBIQUITIN-C CHAIN B COVALENTLY LINKED TO CHAINS C, CHAIN E IS COVALENTLY LINKED TO CHAIN F UNP RESIDUES 1-76 9606
283 4S22 1 A, B, C, D Ubiquitin residues 77-152 9913
284 3EJD 1 A, C, E, G Acyl carrier protein 562
285 2C7M 2 B UBIQUITIN 9913
286 1TBE 1 A, B TETRAUBIQUITIN 9606
287 3PT2 2 B Ubiquitin B 9606
288 4H2T 2 C, D Aminoacyl carrier protein 1 1355477
289 5VZW 2 C, D Ubiquitin 9606
290 5V5I 2 B, D Ubiquitin variant CC.1 32630
291 5JZE 1 B, D Ubiquitin-like protein ISG15 C-terminal 10090
292 2IO0 2 B Small ubiquitin-related modifier 2 precursor 9606
293 3PRM 2 B, D Ubiquitin 9606 3.4.19.12 | Details
294 4R62 2 B Ubiquitin-40S ribosomal protein S27a Ubiquitin 9606
295 5EYA 3 C, D Polyubiquitin-B UNP residues 1-76 9606
296 5GO8 1 A ubiquitin 9606
297 5GO8 2 B D-ubiquitin 9606
298 5TVP 3 Q Small ubiquitin-related modifier 2 10090
299 3A33 2 B Ubiquitin 9606
300 3VHT 3 C Ubiquitin 10090
301 5XIT 1 D, F Ubiquitin-40S ribosomal protein S27a 10090
302 5XIT 3 B, H Ubiquitin-40S ribosomal protein S27a 10090
303 6ASR 1 A, C Ubiquitin residues 1-76 9606
304 2BF8 2 B UBIQUITIN-LIKE PROTEIN SMT3C COVALENT ISOPEPTIDE LINK BETWEEN E2-25K LYSINE 14 AND SUMO C-TERMINUS RESIDUES 21-97 9606
305 2FCN 1 A, B Ubiquitin residues 1-76
306 4DHJ 2 B, F, J, M Ubiquitin aldehyde 9606
307 4DHJ 3 D, H Ubiquitin 9606
308 3ZNH 2 B POLYUBIQUITIN-B GLY76 IS REPLACED WITH A PROPARGYL GROUP 9606
309 5D2M 2 B, E Small ubiquitin-related modifier 2 UNP residues 15-93 9606
310 4BBN 2 C POLYUBIQUITIN-B RESIDUES 1-76 9913
311 4BBN 3 F POLYUBIQUITIN-B RESIDUES 229-304 9913
312 4NQL 2 B Ubiquitin 10090
313 4NQL 3 C Ubiquitin 10090
314 6NJG 2 C Polyubiquitin-B 9606
315 1ZG5 2 A, B, E, F Nitrate/nitrite response regulator protein narL DNA binding domain (residues 147-216) 562
316 1NBF 2 C, D Ubiquitin aldehyde 9606
317 2O6V 1 A, C, E, G Ubiquitin 9606
318 2O6V 2 B, F Ubiquitin 9606
319 2O6V 3 D, H Ubiquitin 9606
320 3OFI 2 C, D Ubiquitin 9606
321 3KYC 3 D Small ubiquitin-related modifier 1 UNP residues 1-97 9606
322 5TL7 1 A, C Ubiquitin-like protein ISG15 C-terminal domain (UNP residues 78-155 10090
323 3M62 2 B UV excision repair protein RAD23 UNP residues 1-84, Ubiquitin-like domain 4932
324 3AUL 1 A, B Polyubiquitin-C Ubiquitin 9606
325 3UGB 2 B Polyubiquitin-C unp residues 1-76 9606
326 5JBV 1 A Ubiquitin 9606
327 5JBV 2 B D-ubiquitin 9606
328 5X3O 1 A Polyubiquitin-B UNP residues 1-76 9606
329 5X3O 2 D D-ubiquitin 9606
330 5ULK 2 B Ubiquitin 9606
331 5ZQ5 2 B, D Ubiquitin 9606
332 6FX4 2 B, D Polyubiquitin-B 9606
333 3NOB 1 A, B, C, D, E, F, G, H Ubiquitin 9606
334 6CRN 2 E, F, G, H Ubiquitin variant 15.2 This is a Ubv (ubiquitin variant) selected by phage display to bind the USP15 USP domain with high affinity 9606
335 3M63 2 B Ubiquitin domain-containing protein DSK2 UNP residues 1-75, Ubiquitin-like domain 4932
336 3IFW 2 B Ubiquitin 9606
337 5MPO 1 A, B Molybdopterin synthase sulfur carrier subunit 9606
338 2QRA 1 A, B, C, D Baculoviral IAP repeat-containing protein 4 BIR1 domain 9606 2.3.2.27 | Details
339 3N3K 2 B Ubiquitin 9606
340 6A6I 2 B, D Polyubiquitin-B UNP residues 1-76 9606
341 6A6I 3 F, H Polyubiquitin-B UNP residues 1-77 9606
342 5GHA 2 E, F, G, H Sulfur Carrier TtuB G65C mutant 274
343 5W8U 2 B, D Ubiquitin-like protein ISG15 UNP residues 80-156 9606
344 2FCM 1 A, B Ubiquitin residues 1-76
345 4KSK 2 C, D Polyubiquitin-C unp residues 76-152 9606
346 5L6J 2 B, D Ubiquitin-40S ribosomal protein S31 4932
347 5HPK 2 B Ubiquitin variant NL.1 9606
348 5OHL 2 I, J, K, L, M, N, O, P Polyubiquitin-B 9606
349 3I3T 2 B, D, F, H Ubiquitin 9606
350 5FER 3 C, F Ubiquitin-40S ribosomal protein S27a 9913
351 5IBK 3 C, F Polyubiquitin-B UNP residues 75-150 9606
352 5OHK 2 B Polyubiquitin-B 9606
353 1CMX 2 B, D PROTEIN (UBIQUITIN YUH1-UBAL) UBIQUITIN C-TERMINUS MODIFIED TO AN ALDEHYDE ALL 9606 3.1.2.15 | Details
354 3OJ3 1 A, B, C, D, E, F, G, H Ubiquitin Ubiquitin, UNP residues 1-76 9606
355 4DXE 2 G, H, I, J, K, L Acyl carrier protein 1280
356 5N38 2 B Polyubiquitin-B Ser65 is phosphorylated 9606
357 4HCP 2 B NEDD8 unp residues 1-76 9606
358 3O65 2 B, D, F, H Ubiquitin 9606
359 5CRA 2 C, D Polyubiquitin-B UNP residues 1-75 9606
360 2PE6 2 B Small ubiquitin-related modifier 1 9606
361 3QHT 1 A, B Ubiquitin-like protein SMT3 4932
362 5V69 2 B ME.4 9606
363 6IF1 2 C, D Ubiquitin 9606
364 5TL6 2 A, C Ubiquitin-like protein ISG15 C-terminal domain (UNP residues 80-157) 9606
365 5U4P 3 C Ubiquitin-40S ribosomal protein S31 4932
366 5L6I 2 B, D, E Ubiquitin-40S ribosomal protein S31 4932
367 5XPK 1 A Ubiquitin 9606
368 5XPK 2 B D-ubiquitin 9606
369 5XDP 1 B D-ubiquitin 9606
370 5XDP 2 A ubiquitin-B K11/48-branched teraubiquitin 9606
371 5O76 3 E, F UbV.pCBL ubiquitin variant 9606
372 5D0K 3 B, E, H, K Polyubiquitin-B UNP residues 1-76 9606
373 5EQL 2 B Small ubiquitin-related modifier 2 UNP residues 14-89 9606
374 5OHV 1 A, C Ubiquitin 9606
375 5KNL 2 B, E Ubiquitin 84753
376 4I6L 2 B Ubiquitin UNP residues 77-150 9606
377 5TUT 2 B Ubiquitin 9606
378 3UIO 2 B Small ubiquitin-related modifier 2 UNP residues 14-93 9606
379 3OLM 2 D Ubiquitin 4932
380 1ZG1 3 A, B, E, F Nitrate/nitrite response regulator protein narL DNA binding domain (residues 147-216) 562
381 3CMM 2 B, D Ubiquitin 559292
382 4MDK 2 E, F, G, H Ubiquitin UNP residues 76-152 9606
383 5W8T 1 B, D Ubiquitin-like protein ISG15 9606
384 3V60 1 A Ubiquitin-like protein SMT3 unp resicues 20-98 4932
385 5N2W 2 B Polyubiquitin-B Ser65 is phosphorylated to give SEP65 9606
386 4MM3 1 A Ubiquitin UNP residues 1-76 9606
387 2FIF 1 A, C, E Ubiquitin 9913
388 3UIN 2 B Small ubiquitin-related modifier 2 UNP residues 14-93 9606
389 5JQS 2 D Ubiquitin-40S ribosomal protein S27a 9913
390 5YDK 2 B, E, H, K Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9606
391 5YDK 3 C, D, I, J Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9606
392 2XBB 2 C, D UBIQUITIN 9913
393 4OXC 1 A, B, C, D E3 ubiquitin-protein ligase XIAP BIR1 DOMAIN (UNP residues 10-99) 9606 2.3.2.27 | Details
394 2GMI 3 C Ubiquitin 9606
395 4HCN 2 B Polyubiquitin unp RESIDUES 1-76 4932
396 5J26 1 B Ubiquitin Variant i53 9606
397 3DVG 3 X Ubiquitin D77 9606
398 3DVG 4 Y Ubiquitin 9606
399 1WR6 2 E, F, G, H ubiquitin 9913
400 3LDZ 1 E, F, G Ubiquitin 9913
401 3PTF 2 C, D Polyubiquitin-B Ubiquitin 9606
402 6BVA 3 A, B Polyubiquitin-B 9606
403 3V62 1 A, D Ubiquitin-like protein SMT3 unp residues 20-98 4932
404 5ZQ7 2 B, D Ubiquitin 9606
405 2IY1 2 B, D SMALL UBIQUITIN-RELATED MODIFIER 1 9606
406 3RUL 1 A, B, C, D Ubiquitin 9606
407 5BNB 2 E, F, G, I Polyubiquitin-B 9606
408 5LRX 2 B, D Polyubiquitin-B Gly76 was replaced with propargylamide 9606
409 3KYD 3 D Small ubiquitin-related modifier 1 UNP residues 1-96 9606
410 5CAW 2 B, D Polyubiquitin-B phosphorylated at Ser65 Gly76 exchanged with chemical probe, bromopropylamine. The bromide was lost during the coupling. 9606
411 4XOK 1 A, B, C Ubiquitin 9606
412 3MTN 2 B, D UBIQUITIN VARIANT UBV.21.4 9606
413 5ZQ6 2 B, D Ubiquitin 9606
414 5V6A 2 B ME.2 9606
415 5LRV 2 B Polyubiquitin-B Lys11 was replaced with a diaminobutyric acid (DAB) residue 9606
416 5LRV 3 C Polyubiquitin-B Gly76 was replaced with a ligation handle for diubiquitin probe generation 9606
417 3DVN 3 U, X Ubiquitin D77 9606
418 3DVN 4 V, Y Ubiquitin 9606
419 5L8W 3 C Polyubiquitin-B Recombinant expression followed by chemical synthesis 9606
420 1F9J 1 A, B TETRAUBIQUITIN 9606
421 6BYH 3 C, D, H Polyubiquitin-B 9606
422 3A4S 2 C, D NFATC2-interacting protein SLD2, Ubiquitin-like domain, residues 339-412 10090
423 1Y8R 3 C, F Ubiquitin-like protein SMT3C 9606
424 3V61 1 A Ubiquitin-like protein SMT3 unp residues 20-98 4932
425 2FID 1 A Ubiquitin 9913
426 5OHP 2 B, C Polyubiquitin-B 9606
427 5JNE 3 C, G Ubiquitin-like protein SMT3 4932
428 4HXD 1 A, C Polyubiquitin-C 9606 3.4.19.12 | Details
429 1YD8 1 U, V UBIQUIN 9913
430 4BOZ 2 B, C, E UBIQUITIN-C 9606
431 5HPT 2 B, E, H Ubiquitin variant P2.3 9606
432 3WXG 2 B, E Ubiquitin 10090
433 3WXG 3 C, F Ubiquitin UNP residues 1-72 10090
434 6CP2 3 C Polyubiquitin-B 9606
435 1TGZ 2 B Ubiquitin-like protein SMT3C 9606
436 2IY0 2 B SMALL UBIQUITIN-RELATED MODIFIER 1 9606
437 4XKH 1 A, B, D, F, G, I Polyubiquitin-C UNP RESIDUES 77-152 9913
438 3IHP 2 C, D Ubiquitin 9606
439 5LN1 2 U Polyubiquitin-B 9606
440 3K9P 2 B Ubiquitin 9606
441 3DBH 3 I, J, K, L NEDD8 9606
442 4BVU 3 C UBIQUITIN OXYESTER LINK BETWEEN G76 AND UBCH5C S85 9606
443 6JB6 1 B Ubiquitin 9606
444 5CVN 3 D Polyubiquitin-B UNP residues 1-76 9606
445 3JSV 1 A Ubiquitin 9606
446 3JSV 2 B Ubiquitin 9606
447 3DBL 3 I, J, K, L NEDD8 9606
448 3TBL 2 D, E Ubiquitin 9606
449 2HTH 1 A Ubiquitin 9606
450 3KW5 2 B Ubiquitin 9606
451 6EQI 1 A Ubiquitin 9606
452 5E6J 2 B, E ubiquitin 32630
453 5E6J 3 C, F Polyubiquitin-B 32630
454 2NVU 4 I, J NEDD8 9606
455 2XK5 1 A UBIQUITIN 9606
456 2XK5 2 B UBIQUITIN 9606
457 4JQW 2 C Polyubiquitin-C Ubiquitin 9606
458 4RF0 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-75 9606
459 3KVF 2 B Ubiquitin 9606
460 6FYH 2 B Polyubiquitin-B 9606
461 5AF6 1 A, B, C, D, E UBIQUITIN ISOPEPTIDE BONDS ACROSS BETWEEN CHAINS, A76 C AND D33 NZ, B76 C AND A33 NZ, C76C AND B33 NZ, E76 C AND C33 NZ. ISOPEPTIDE BOND ACROSS THE ASU FOR, D76 C AND E33 NZ SYMM 9606
462 3H1U 1 A, B Ubiquitin 9913
463 2G4D 2 B, D Small ubiquitin-related modifier 1 residues 20-97 9606
464 5JTJ 2 B Polyubiquitin-B 9606
465 2WX1 1 A, B UBIQUITIN 9913
466 4WUR 2 B Polyubiquitin-B UNP residues 1-76 9606
467 4II3 2 B, D Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 4896
468 5C7J 2 C, D Polyubiquitin-C UNP residues 1-74 9606
469 4S1Z 1 A, B, C, D, E Ubiquitin residues 1-76 9606
470 6DC6 2 B, D Ubiquitin 9606
471 4XOL 1 A, B Ubiquitin 9606
472 5JP3 2 B, D, F, H Polyubiquitin-B 9606
473 4P4H 3 S, T, U, W, X Ubiquitin-60S ribosomal protein L40 9606
474 3GZN 3 I, J NEDD8 9606
475 5O44 1 A, E Ubiquitin 7370
476 5O44 2 B, C Polyubiquitin-B 9606
477 5O44 3 D, F Polyubiquitin-B 9606
478 3PHD 2 E, F, G, H Polyubiquitin 9606
479 3DBR 3 I, J, K, L NEDD8 9606
480 5YIK 2 C, D, F ubiquitin UNP RESIDUES 1-76 9606
481 5ZBU 3 E Ubiquitin 9606
482 3N30 1 A, B Ubiquitin 9606
483 4P5O 5 H, K NEDD8 9606
484 3ZLZ 1 A, B UBIQUITIN TRI-UBIQUITIN CHAIN LINKED VIA LYS6. K48R IN BOTH MOLECULES. ISOPEPTIDE LINKAGES ARE NOT RESOLVED. 9606
485 3JVZ 3 X, Y Ubiquitin 9606
486 4DHZ 2 B Ubiquitin aldehyde 9606
487 4DHZ 3 E Ubiquitin 9606
488 5YIJ 2 C, D, G Ubiquitin UNP RESIDUES 1-76 9606
489 1Z5S 2 B Ubiquitin-like protein SMT3C 9606
490 3DQV 1 A, B NEDD8 NEDD8 C-terminus covalently linked to Cul5 Lys724 9606
491 5UDH 3 E Ubiquitin C variant Hexa-his N-terminal tagged protein UNP residues 17-92 9606
492 5AIT 3 C, F POLYUBIQUITIN-C UNP RESIDUES 1-76 9913
493 5O6S 1 A, B, C, D, E, F Polyubiquitin-B Variant of ubiquitin identified from phage-display 9606
494 2BWE 2 S, T, U DSK2 UBL DOMAIN OF DSK2, RESIDUES 1-75 OF THE INTACT PROTEIN UBL DOMAIN, RESIDUES 1-75 4932
495 3VFK 1 A ubiquitin, C-terminal fused by Cys-Lys-D-Ala-D-Ala 9606
496 2IO2 2 B Small ubiquitin-related modifier 1 9606
497 5C7M 2 B, C Polyubiquitin-C UNP residues 1-75 9606
498 5AEK 2 B, D, F, H, J, L, N, P, R, T, V, X SMALL UBIQUITIN-RELATED MODIFIER 1 9606
499 1R4M 3 I, J, K, L Ubiquitin-like protein NEDD8 9606
500 3JW0 3 X, Y Ubiquitin 9606
501 4LCD 3 E, F Ubiquitin UNP residues 1-75 9606
502 6DJ9 2 G, H, I, J, K, L Ubiquitin Variant UbV 15.D The following is a variant of ubiquitin selected by phage display to bind to the USP15 N-terminus 9606
503 4DDG 2 D, E, F, G, H, I, M, N, O, P, Q, R Polyubiquitin-C 9606
504 2CKH 2 B SMALL UBIQUITIN-RELATED MODIFIER 2 9606
505 5JTV 2 B, D, F, H Polyubiquitin-B 9606
506 5OHN 2 B, D Polyubiquitin-B 9606
507 5TTE 3 F ubiquitin unp residues 1-76 4565
508 2FCQ 1 A, B Ubiquitin residues 1-76 9031
509 3EEC 1 A, B Ubiquitin 9606
510 5VNZ 3 C, F Ubiquitin 9606
511 4NQK 2 E, F, G, H, I, J Ubiquitin UNP residues 76-152 9606
512 6C16 3 D, H Polyubiquitin-B 9606
513 4DDI 2 D, E, F, G, H, I Polyubiquitin-C 9606
514 5H7S 1 E, F Ubiquitin-like 1 9606
515 2IYD 2 B SMALL UBIQUITIN-RELATED MODIFIER 2 CATALYTIC FRAGMENT, RESIDUES 15-95 9606
516 5EDV 3 E, F, G, H Polyubiquitin-B UNP residues 1-76 9606
517 2IO3 2 B Small ubiquitin-related modifier 2 9606
518 5CVO 3 C, F Polyubiquitin-B UNP residues 1-76 9606
519 4UF6 2 B, E, H, K POLYUBIQUITIN-B GLY76 OF UBIQUITIN IS REPLACED BY GLY-AYE THAT IS COVALENTLY LINKED TO THE ACTIVE SITE CYS88 OF UCH- L5 9606
520 5OHM 1 A, C, E, G, I, K Polyubiquitin-C 9606
521 4ZUX 10 X, c, h, m Polyubiquitin-B 9606
522 2DX5 2 B Ubiquitin 9913
523 3OJ4 2 B, E Ubiquitin Ubiquitin, UNP residues 1-76 9606
524 1R4N 3 I, J, K, L Ubiquitin-like protein NEDD8 9606
525 5VO0 3 C, F Ubiquitin 9606
526 6DJW 2 B Ubiquitin 9913
527 2AYO 2 B Ubiquitin 9606
528 5KHY 1 A Polyubiquitin-B 9606
529 5KHY 2 B Polyubiquitin-B 9606
530 6DJX 2 B Ubiquitin 9913
531 4JIO 2 U Ubiquitin 9606
532 4WHV 3 A, F, G, L Polyubiquitin-B unp residues 1-76 9606
533 6JLT 1 A ubiquitin 9606
534 6J99 7 L Ubiquitin 9606
535 6NQA 7 L Ubiquitin 9606
536 6NOG 5 L Ubiquitin 9606
537 6NN6 8 L Ubiquitin 9606
538 6J4I 1 A Small ubiquitin-related modifier 1 9606
539 6NJ9 5 L Ubiquitin 9606
540 6N13 2 D ubiquitin 9606
541 6N13 4 A phosphoubiquitin 9606
542 6MSB 19 u, w Ubiquitin 9606
543 6MSD 19 u, w Ubiquitin 9606
544 6MSE 19 u Ubiquitin 9606
545 6MSG 19 u Ubiquitin 9606
546 6GF2 1 A Ubiquitin D 9606
547 5ZEW 1 A Ubiquitin-like protein UNP residues 1-77 311458
548 6FTX 8 N, O Polyubiquitin-B 9606
549 5YMY 1 A Ubiquitin 9606
550 5YMY 2 B Ubiquitin 9606
551 5XQM 1 A Small ubiquitin-related modifier 6239
552 5VZM 1 A Ubiquitin UNP residues 1-76 9606
553 5XK4 1 A Polyubiquitin-B UNP residues 1-76 9606
554 5XK5 1 A Polyubiquitin-B UNP residues 1-76 9606
555 5VEY 2 B Polyubiquitin-B 9606
556 5VF0 1 A Polyubiquitin-B 9606
557 5XBO 1 A Polyubiquitin-B UNP residues 1-76 9606
558 5N9V 1 A NAD(P)(+)--arginine ADP-ribosyltransferase 5911 2.4.2.31 | Details
559 5UJL 1 A, B Ubiquitin residues 1-76 9606
560 5UJN 1 A, B Ubiquitin 9606
561 5TR5 1 A E3 ubiquitin-protein ligase parkin residues 1-76 9606 2.3.2.31 | Details
562 5GO0 1 A Ubiquitin, putative 5691
563 5GJQ 34 y Polyubiquitin-B UNP RESIDUES 1-76 9606
564 5GJL 1 A Uncharacterized protein UNP RESIDUES 1-98 5833
565 5GHB 1 A Small ubiquitin-related modifier 2 Lys42 acetylated mature SMALL UBIQUITIN-RELATED MODIFIER 2 (SUMO2) Residues 1-14 (MGSSHHHHHHSQDP) represent a non-native purification tag. These residues were neither assigned nor included in structure calculation. UNP RESIDUES 1-93 9606
566 5GHC 1 A Small ubiquitin-related modifier 2 Lys33 acetylated mature SMALL UBIQUITIN-RELATED MODIFIER 2 (SUMO2) Residues 1-14 (MGSSHHHHHHSQDP) represent a non-native purification tag. These residues were neither assigned nor included in structure calculation. UNP RESIDUES 1-93 9606
567 5GHD 1 A Small ubiquitin-related modifier 1 Lys39 acetylated mature SMALL UBIQUITIN-RELATED MODIFIER 1 (SUMO1) Residues 1-14 (MGSSHHHHHHSQDP) represent a non-native purification tag. These residues were neither assigned nor included in structure calculation. UNP RESIDUES 1-97 9606
568 5KGF 8 M, O Ubiquitin 9606
569 5B7A 1 A Small ubiquitin-related modifier 1 Lys37 acetylated mature SMALL UBIQUITIN-RELATED MODIFIER 1 ( SUMO1) Residues 1-14 (MGSSHHHHHHSQDP) represent a non-native purification tag. These residues were neither assigned nor included in structure calculation. UNP residues 1-97 9606
570 2NBU 1 A UV excision repair protein RAD23 residues 1-78 4932
571 2NBD 1 A entity 9606
572 2NBE 1 A entity 9606
573 2N9E 2 B Small ubiquitin-related modifier 2 9606
574 2N7K 1 A NEDD8 9606
575 2N4F 1 A uncharacterized protein AR3433A 3702
576 5A5B 9 9 UBIQUITIN ALDEHYDE 9606
577 2N3U 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
578 2N3V 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
579 2N3W 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
580 2N2K 1 A ubiquitin 9606
581 2N2K 2 B ubiquitin 9606
582 2N1V 1 A Small ubiquitin-related modifier 1 UNP residues 1-97 9606
583 2N1W 1 A Small ubiquitin-related modifier 2 UNP residues 1-93 9606
584 2N1A 1 A Small ubiquitin-related modifier 1 9606
585 2N13 2 B Ubiquitin 9606
586 2N13 3 C Ubiquitin 9606
587 2MWS 1 A Ubiquitin UNP residues 1-76 9606
588 2MW5 1 A Small ubiquitin-related modifier 1 9606
589 2MUR 2 B Ubiquitin 9606
590 2MSG 1 A Ubiquitin UNP residuse 1-72 9606
591 2MRO 1 A Polyubiquitin-B Human Ubiquitin 9606
592 2MRE 1 A Polyubiquitin-C unp residues 1-76 9606
593 2MQJ 1 A Ubiquitin-like protein UNP residues 1-77 311458
594 2MP2 1 A Small ubiquitin-related modifier 3 UNP residues 12-92 9606
595 2MP2 2 B Small ubiquitin-related modifier 3 UNP residues 2-90 9606
596 2MOR 1 A Ubiquitin UNP residues 1-76 9606
597 2MLB 1 A redesigned ubiquitin 32630
598 2MJB 1 A Ubiquitin-60S ribosomal protein L40 Ubiquitin-like 3 domain 9606
599 2MJ5 1 A Polyubiquitin-C UNP residuses 1-76 9606
600 2MI8 1 A Ubiquitin 9606
601 2RU6 1 A Ubiquitin 9606
602 2MCN 2 B Ubiquitin UNP residues 1-76 9606
603 2MBQ 1 A, B Ubiquitin UNP residues 1-76 9606
604 2MBO 1 A, B Ubiquitin UNP residues 1-76 9606
605 2MBH 2 A Ubiquitin 9606
606 2MBE 1 A Ubiquitin D 9606
607 2MBB 2 B Polyubiquitin-B UNP P0CG47 residues 1-76 9606
608 2M46 1 A Arsenate reductase, putative 1280
609 2M17 1 A Ubiquitin-like domain-containing CTD phosphatase 1 9606 3.1.3.16 | Details
610 2M0X 1 A engineered ubiquitin variant 9606
611 2LZ6 1 A Ubiquitin 9606
612 2LXA 1 A Ubiquitin-like protein MDY2 ubiquitin-like domain 4932
613 2LXC 1 A Ubiquitin-like protein MDY2 ubiquitin-like domain 4932
614 2LVO 1 A Ubiquitin 9606
615 2LVP 1 A, B Ubiquitin 9606
616 2LVQ 1 A, B Ubiquitin 9606
617 2RSU 1 A Ubiquitin 9606
618 2LTE 1 A Specialized acyl carrier protein 287
619 4ASW 2 C UBIQUITIN-LIKE PROTEIN MDY2 RESIDUES 70-152 4932
620 2LRW 1 A Ubiquitin, putative 185431
621 2LMR 1 A Ankyrin repeat and SAM domain-containing protein 1A SAM 1 domain residues 691-770 9606
622 2LMC 2 B DNA-directed RNA polymerase subunit beta UNP residues 1151-1213 562 2.7.7.6 | Details
623 2LKI 1 A Putative uncharacterized protein 915
624 2LJ5 1 A Ubiquitin 9606
625 2LGD 1 A Ubiquitin-like domain-containing CTD phosphatase 1 C-TERMINAL DOMAIN (UNP RESIDUES 1-81) 9606 3.1.3.16 | Details
626 2LD9 1 A Ubiquitin 9606
627 2LAS 1 A Small ubiquitin-related modifier 1 9606
628 2L83 1 A Small archaeal modifier protein 1 2246
629 2L7R 1 A Ubiquitin-like protein FUBI 9606
630 2L52 1 A METHANOSARCINA ACETIVORANS SAMP1 HOMOLOG 2214
631 2L3Z 1 A Ubiquitin UNP Residues 1-76 9606
632 2L0T 1 A Ubiquitin 9606
633 2L0F 1 A Ubiquitin 9606
634 2L00 2 B Ubiquitin ubiquitin core domain 4932
635 2RR9 1 A, B ubiquitin 9606
636 2KX3 1 A Ubiquitin-like domain-containing CTD phosphatase 1 UNP RESIDUES 1-81 9606 3.1.3.16 | Details
637 2KX0 1 A ubiquitin B 9606
638 2KWV 2 B Ubiquitin 9606
639 2KWU 2 B Ubiquitin 9606
640 2KTF 1 A Ubiquitin 9606
641 2KQS 1 A Small ubiquitin-related modifier 1 9606
642 2KOX 1 A Ubiquitin 9606
643 2KO3 1 A NEDD8 9606
644 2KNB 1 A E3 ubiquitin-protein ligase parkin 10116 2.3.2.31 | Details
645 2KN5 1 A Ubiquitin 9606
646 2KLG 1 A Ubiquitin 9606
647 2KLC 1 A Ubiquilin-1 Ubiquitin-like domain: Residues 34-112 9606
648 2KK8 1 A Uncharacterized protein AT4g05270 sequence database residues 1-74 3702
649 2KJR 1 A CG11242 ubl domain, residues 8-92 7227
650 2KJH 2 B Ubiquitin 9606
651 2KHW 2 B Ubiquitin 9606
652 2KDB 1 A Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein Ubiquitin-like domain, residues 9-85 9606
653 2KDE 2 B, C Ubiquitin 8355
654 2KDF 2 B, C Ubiquitin 9606
655 2KD0 1 A LRR repeats and ubiquitin-like domain-containing protein At2g30105 The first 10 residues of the sequence MGHHHHHHSH correspond to a N-terminal tag. UNP residues 11-85 3702
656 2KAN 1 A uncharacterized protein ar3433a 3702
657 2K8H 1 A Small ubiquitin protein UNP residues 8-108 5691
658 2K8B 1 A Ubiquitin 9606
659 2K8C 1 A Ubiquitin 9606
660 2K6D 2 B Ubiquitin ubiquitin 9606
661 2RPQ 1 A Small ubiquitin-related modifier 2 9606
662 2K39 1 A Ubiquitin 8355
663 2K25 1 A UBB 9606
664 2K22 1 A Putative uncharacterized protein Ta0895 2303
665 2K1F 1 A CG4494-PA dsmt3 7227
666 2JZZ 1 A Ubiquitin 9606
667 2RNJ 1 A Response regulator protein vraR HTH LUXR-TYPE DOMAIN, UNP residues 138-209 1280
668 2JY6 1 A Ubiquitin protein 9606
669 2JXX 1 A NFATC2-interacting protein Ubiquitin-like domain: Residues 342-419 9606
670 2JWZ 1 A Ubiquitin 4932
671 2JVC 1 A ubiquitin_like protein
672 2JT4 2 B Ubiquitin SH3 domain sequence database residues 350-420 4932
673 2Z59 2 B Ubiquitin 9606
674 2JRI 2 B, C UBC protein sequence database residues 318-469 9606
675 2JQ4 1 A Hypothetical protein Atu2571 358
676 2PE9 1 A, B Ubiquitin 9606
677 2PEA 1 A, B Ubiquitin 9606
678 2NR2 1 A Ubiquitin 9606
679 2DZI 1 A Ubiquitin-like protein 4A ubiquitin-like domain 9606
680 2HJ8 1 A Interferon-induced 17 kDa protein ISG15 C-terminal domain (8.9 kDa), Ubiquitin-like 2 9606
681 2G3Q 2 B Ubiquitin 4932
682 2DEN 2 B Ubiquitin 9606
683 2G1E 1 A hypothetical protein Ta0895 2303
684 2FUH 2 B Ubiquitin Ubiquitin 10116
685 2F09 1 A Hypothetical protein ydhA 562
686 2AWT 1 A Small ubiquitin-related modifier 2 9606
687 2ASQ 1 A Small ubiquitin-related modifier 1 Structured Region of SUMO-1 (residues 21-97) 9606
688 1ZW7 1 A Ubiquitin 4932
689 1ZGU 2 B Ubiquitin 9606
690 1X1M 1 A Ubiquitin-like protein SB132 ubiquitin-like domain 10090
691 1WZ0 1 A Ubiquitin-like protein SMT3B ubiquitin-like molecule 9606
692 1YX5 2 B Ubiquitin Sequence Database Residues 1-76 9606
693 1YX6 2 B Ubiquitin Sequence Database Residues 1-76 9606
694 1WY8 1 A Np95-like ring finger protein, isoform a ubiquitin-like domain 9606 2.3.2.27 | Details
695 1WXV 1 A BAG-family molecular chaperone regulator-1 ubiquitin-like domain 9606
696 1WX7 1 A Ubiquilin 3 ubiquitin-like fold 9606
697 1WX8 1 A RIKEN cDNA 4931431F19 ubiquitin-like domain 10090
698 1WX9 1 A HLA-B associated transcript-3 isoform b ubiquitin-like domain 9606
699 2BGF 1 A, B DI-UBIQUITIN ISOPEPTIDE BOND BETWEEN GLY76A AND LYS48B 9606
700 1XQQ 1 A ubiquitin 9606
701 1WR1 1 A Ubiquitin 4932
702 1U4A 1 A Ubiquitin-like protein SMT3A ubiquitin-like domain 9606
703 1WJN 1 A Tubulin-folding protein TBCE ubiquitin like-domain 10090
704 1WGD 1 A Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein Ubl-domain 9606
705 1WGG 1 A Ubiquitin carboxyl-terminal hydrolase 14 ubiquitin-like domain 10090 3.1.2.15 | Details
706 1WH3 1 A 59 kDa 2'-5'-oligoadenylate synthetase like protein ubiquitin like domain 9606
707 1WIA 1 A hypothetical ubiquitin-like protein (RIKEN cDNA 2010008E23) ubiquitin-fold 10090
708 1WE6 1 A splicing factor, putative Ubiquitin-like domain 3702
709 1WE7 1 A Sf3a1 protein Ubiquitin-like domain 10090
710 1SF0 1 A hypothetical protein PF1061 2261
711 1V86 1 A DNA segment, Chr 7, Wayne State University 128, expressed ubiquitin domain 10090
712 1V80 1 A Ubiquitin/60s ribosomal protein L40 fusion 9913
713 1V81 1 A Ubiquitin/60s ribosomal protein L40 fusion 9913
714 1RWS 1 A hypothetical protein PF1061 2261
715 1V6E 1 A cytoskeleton-associated protein 1 Ubiquitin-like domain 10090
716 1V5O 1 A 1700011N24Rik protein Ubiquitin-like Domain 10090
717 1V5T 1 A 8430435I17Rik Protein Ubiquitin-like Domain 10090
718 1Q5W 2 B Ubiquitin 9606
719 1Q0W 2 B Ubiquitin 4932
720 1UH6 1 A ubiquitin-like 5 10090
721 1UEL 1 A UV excision repair protein RAD23 homolog B ubiquitin-like domain (RESIDUES 1-95) 9606
722 1P9D 2 U UV excision repair protein RAD23 homolog A ubiquitin-like domain 9606
723 1P98 1 A UV excision repair protein RAD23 homolog A Ubiquitin-like domain 9606
724 1P1A 1 A UV excision repair protein RAD23 homolog B Ubiquitin-like domain 9606
725 1P0R 1 A ubiquitin-like 5 9606
726 1OTR 2 B Ubiquitin 4932
727 1MG8 1 A Parkin ubiquitin-like domain 10090 2.3.2.31 | Details
728 1IYF 1 A parkin ubiquitin-like domain 9606 2.3.2.31 | Details
729 1M94 1 A Protein YNR032c-a 4932
730 1L2N 1 A Ubiquitin-like protein SMT3 4932
731 1G6J 1 A UBIQUITIN 9606
732 1FXT 2 B UBIQUITIN 9606
733 1D3Z 1 A PROTEIN (UBIQUITIN) 9606
734 1C3T 1 A PROTEIN (1D8 UBIQUITIN) 9606
735 1UD7 1 A PROTEIN (UBIQUITIN CORE MUTANT 1D7) 9606
736 1BT0 1 A PROTEIN (UBIQUITIN-LIKE PROTEIN 7, RUB1) 3702
737 1A5R 1 A SUMO-1 9606