1P9D

High-resolution structure of the complex of HHR23A ubiquitin-like domain and the C-terminal ubiquitin-interacting motif of proteasome subunit S5a


Sequence Similarity Clusters for the Entities in PDB 1P9D

Entity #1 | Chains: S
26S proteasome non-ATPase regulatory subunit 4 protein, length: 45 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 27170
95 % 3 3 23850
90 % 3 3 23085
70 % 3 3 21005
50 % 3 3 18064
40 % 3 3 15974
30 % 3 3 13379
Entity #2 | Chains: U
UV excision repair protein RAD23 homolog A protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 25842
95 % 2 3 22789
90 % 2 3 22062
70 % 2 4 17678
50 % 2 4 15377
40 % 2 4 13674
30 % 640 655 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1UEL 2 B 26S proteasome non-ATPase regulatory subunit 4 ubiquitin-interacting motif (RESIDUES 201-248) 9606
2 1P9C 1 A 26S proteasome non-ATPase regulatory subunit 4 C-terminal ubiquitin-interacting motif 9606
3 1P9D 1 S 26S proteasome non-ATPase regulatory subunit 4 C-terminal ubiquitin-interacting motif, PUBS2 9606