1P9D

High-resolution structure of the complex of HHR23A ubiquitin-like domain and the C-terminal ubiquitin-interacting motif of proteasome subunit S5a


Sequence Similarity Clusters for the Entities in PDB 1P9D

Entity #1 | Chains: S
26S proteasome non-ATPase regulatory subunit 4 protein, length: 45 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 27736
95 % 3 3 24316
90 % 3 3 23526
70 % 3 3 21386
50 % 3 3 18389
40 % 3 3 16242
30 % 3 3 13609
Entity #2 | Chains: U
UV excision repair protein RAD23 homolog A protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 26356
95 % 2 3 23226
90 % 2 3 22474
70 % 2 4 18017
50 % 2 4 15660
40 % 2 4 13896
30 % 660 675 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1UEL 2 B 26S proteasome non-ATPase regulatory subunit 4 ubiquitin-interacting motif (RESIDUES 201-248) 9606
2 1P9C 1 A 26S proteasome non-ATPase regulatory subunit 4 C-terminal ubiquitin-interacting motif 9606
3 1P9D 1 S 26S proteasome non-ATPase regulatory subunit 4 C-terminal ubiquitin-interacting motif, PUBS2 9606