Sequence Similarity Clusters for the Entities in PDB 1P8V

Entity #1 | Chains: A
Platelet glycoprotein Ib alpha chain protein, length: 279 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 55725
95 % 7 13 3204 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 1.4
PDBFlex
90 % 7 13 3249
70 % 7 13 3221
50 % 7 13 3144
40 % 7 13 3063
30 % 7 13 2870
Entity #2 | Chains: B
Prothrombin protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 305 335 45
95 % 306 336 60 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 306 336 65
70 % 307 338 76
50 % 307 338 100
40 % 307 338 124
30 % 307 338 135
Entity #3 | Chains: C
Prothrombin protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 265 290 55
95 % 340 374 35 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 345 381 38
70 % 362 405 43
50 % 362 405 78
40 % 1524 1682 4
30 % 1646 1831 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.