Sequence Similarity Clusters for the Entities in PDB 1P8V

Entity #1 | Chains: A
Platelet glycoprotein Ib alpha chain protein, length: 279 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58027
95 % 7 13 3372 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 1.4
PDBFlex
90 % 7 13 3417
70 % 7 13 3378
50 % 7 13 3288
40 % 7 13 3198
30 % 7 13 2993
Entity #2 | Chains: B
Prothrombin protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 308 338 45
95 % 309 339 64 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 309 339 67
70 % 310 341 78
50 % 310 341 107
40 % 310 341 131
30 % 310 341 138
Entity #3 | Chains: C
Prothrombin protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 265 290 58
95 % 343 377 36
90 % 348 384 39
70 % 365 408 46
50 % 365 408 84
40 % 1560 1720 4
30 % 1683 1870 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures