Sequence Similarity Clusters for the Entities in PDB 1P8V

Entity #1 | Chains: A
Platelet glycoprotein Ib alpha chain protein, length: 279 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57237
95 % 7 13 3309 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 1.4
PDBFlex
90 % 7 13 3355
70 % 7 13 3321
50 % 7 13 3231
40 % 7 13 3143
30 % 7 13 2946
Entity #2 | Chains: B
Prothrombin protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 305 335 45
95 % 306 336 61 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 306 336 66
70 % 307 338 78
50 % 307 338 107
40 % 307 338 131
30 % 307 338 136
Entity #3 | Chains: C
Prothrombin protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 265 290 57
95 % 340 374 35
90 % 345 381 39
70 % 362 405 46
50 % 362 405 84
40 % 1539 1698 4
30 % 1662 1848 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures