Sequence Similarity Clusters for the Entities in PDB 1P8D

Entity #1 | Chains: A,B
Oxysterols receptor LXR-beta protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 9 1579
95 % 14 16 1282
90 % 14 16 1305
70 % 21 26 887
50 % 21 26 928
40 % 24 34 793
30 % 788 900 9
Entity #2 | Chains: C,D
nuclear receptor coactivator 1 isoform 3 protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 17 1212
95 % 16 17 1659
90 % 16 17 1692
70 % 16 17 1729
50 % 16 17 1758
40 % 16 17 1765
30 % 16 17 1701

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.