Sequence Similarity Clusters for the Entities in PDB 1P8D

Entity #1 | Chains: A,B
Oxysterols receptor LXR-beta protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 10 2022
95 % 14 16 1442 Flexibility: Low
Max RMSD: 9.1, Avg RMSD: 2.0
PDBFlex
90 % 14 16 1467
70 % 21 26 993
50 % 21 26 1039
40 % 24 34 890
30 % 1097 1261 8
Entity #2 | Chains: C,D
nuclear receptor coactivator 1 isoform 3 protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 19 1385
95 % 18 19 1625
90 % 18 19 1659
70 % 18 19 1663
50 % 18 19 1703
40 % 18 19 1697
30 % 18 19 1662

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures