Sequence Similarity Clusters for the Entities in PDB 1P8D

Entity #1 | Chains: A,B
Oxysterols receptor LXR-beta protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 9 1789
95 % 14 16 1424
90 % 14 16 1450
70 % 21 26 978
50 % 21 26 1015
40 % 24 34 877
30 % 889 1020 10
Entity #2 | Chains: C,D
nuclear receptor coactivator 1 isoform 3 protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 19 1193
95 % 18 19 1599
90 % 18 19 1630
70 % 18 19 1637
50 % 18 19 1684
40 % 18 19 1698
30 % 18 19 1670

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures