Sequence Similarity Clusters for the Entities in PDB 1P8D

Entity #1 | Chains: A,B
Oxysterols receptor LXR-beta protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 9 1521
95 % 14 16 1239
90 % 14 16 1264
70 % 21 26 842
50 % 21 26 885
40 % 24 34 755
30 % 710 822 11
Entity #2 | Chains: C,D
nuclear receptor coactivator 1 isoform 3 protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 17 1161
95 % 16 17 1601
90 % 16 17 1635
70 % 16 17 1665
50 % 16 17 1699
40 % 16 17 1713
30 % 16 17 1652

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.