Sequence Similarity Clusters for the Entities in PDB 1P8D

Entity #1 | Chains: A,B
Oxysterols receptor LXR-beta protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 9 1675
95 % 14 16 1344
90 % 14 16 1367
70 % 21 26 917
50 % 21 26 971
40 % 24 34 838
30 % 863 982 10
Entity #2 | Chains: C,D
nuclear receptor coactivator 1 isoform 3 protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 18 1186
95 % 17 18 1609
90 % 17 18 1648
70 % 17 18 1665
50 % 17 18 1701
40 % 17 18 1707
30 % 17 18 1670

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.