Sequence Similarity Clusters for the Entities in PDB 1P8D

Entity #1 | Chains: A,B
Oxysterols receptor LXR-beta protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 10 1937
95 % 14 16 1391
90 % 14 16 1419
70 % 21 26 959
50 % 21 26 1013
40 % 24 34 861
30 % 1068 1223 8
Entity #2 | Chains: C,D
nuclear receptor coactivator 1 isoform 3 protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 19 1311
95 % 18 19 1545
90 % 18 19 1581
70 % 18 19 1585
50 % 18 19 1623
40 % 18 19 1619
30 % 18 19 1598

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures