Sequence Similarity Clusters for the Entities in PDB 1P8D

Entity #1 | Chains: A,B
Oxysterols receptor LXR-beta protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 9 1642
95 % 14 16 1327 Flexibility: Low
Max RMSD: 9.1, Avg RMSD: 2.6
PDBFlex
90 % 14 16 1349
70 % 21 26 910
50 % 21 26 958
40 % 24 34 817
30 % 859 977 9
Entity #2 | Chains: C,D
nuclear receptor coactivator 1 isoform 3 protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 18 1161
95 % 17 18 1584
90 % 17 18 1621
70 % 17 18 1635
50 % 17 18 1668
40 % 17 18 1677
30 % 17 18 1642

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.