Sequence Similarity Clusters for the Entities in PDB 1P84

Entity #1 | Chains: A
Ubiquinol-cytochrome C reductase complex core protein I protein, length: 431 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 7903
95 % 6 8 6189 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 6 8 6181
70 % 6 8 6044
50 % 6 8 5650
40 % 6 8 5301
30 % 11 58 592
Entity #10 | Chains: J
Heavy Chain (Vh) Of Fv-Fragment protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 5749
95 % 6 8 6411 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 6 8 6394
70 % 32 39 1090
50 % 372 566 7
40 % 604 916 5
30 % 676 1042 7
Entity #11 | Chains: K
Light Chain (Vl) Of Fv-Fragment protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 5777
95 % 6 8 6433 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 6 8 6413
70 % 125 191 72
50 % 196 305 21
40 % 605 916 5
30 % 677 1042 7
Entity #2 | Chains: B
Ubiquinol-cytochrome C reductase complex core protein 2 protein, length: 352 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 5565
95 % 6 8 6232 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 6 8 6217
70 % 6 8 6074
50 % 6 8 5684
40 % 6 8 5328
30 % 6 8 4786
Entity #3 | Chains: C
cytochrome b protein, length: 385 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 11602
95 % 6 8 6211 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 6 8 6201
70 % 6 8 6061
50 % 11 57 563
40 % 12 65 445
30 % 12 65 445
Entity #4 | Chains: D
Cytochrome c1, heme protein protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 5630
95 % 6 8 6294 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 6 8 6277
70 % 6 8 6142
50 % 11 54 610
40 % 11 54 642
30 % 12 62 464
Entity #5 | Chains: E
Ubiquinol-cytochrome C reductase iron-sulfur subunit protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 5693
95 % 6 8 6354 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 6 8 6338
70 % 6 8 6193
50 % 11 52 656
40 % 12 60 486
30 % 12 60 483
Entity #6 | Chains: F
Ubiquinol-cytochrome C reductase complex 17 kDa protein protein, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 10757
95 % 4 6 10764 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 4 6 10630
70 % 4 6 10098
50 % 4 6 9134
40 % 4 6 8359
30 % 4 6 7359
Entity #7 | Chains: G
Ubiquinol-cytochrome C reductase complex 14 kDa protein protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 5751
95 % 6 8 6413 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 6 8 6396
70 % 6 8 6250
50 % 6 8 5834
40 % 6 8 5464
30 % 6 8 4908
Entity #8 | Chains: H
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 5787
95 % 6 8 6442 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.9
PDBFlex
90 % 6 8 6422
70 % 6 8 6275
50 % 6 8 5858
40 % 6 8 5484
30 % 6 8 4932
Entity #9 | Chains: I
Ubiquinol-cytochrome C reductase complex 7.3 kDa protein protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 24300
95 % 3 5 13364 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 3 5 13159
70 % 3 5 12384
50 % 3 5 11050
40 % 3 5 10027
30 % 3 5 8737

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.