Sequence Similarity Clusters for the Entities in PDB 1P84

Entity #1 | Chains: A
Ubiquinol-cytochrome C reductase complex core protein I protein, length: 431 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 7812
95 % 6 8 6111 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 6 8 6102
70 % 6 8 5952
50 % 6 8 5565
40 % 6 8 5221
30 % 11 55 632
Entity #10 | Chains: J
Heavy Chain (Vh) Of Fv-Fragment protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 5680
95 % 6 8 6331 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 6 8 6315
70 % 32 39 1078
50 % 353 540 8
40 % 584 887 5
30 % 656 1013 7
Entity #11 | Chains: K
Light Chain (Vl) Of Fv-Fragment protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 5708
95 % 6 8 6352 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 6 8 6334
70 % 125 188 71
50 % 195 302 22
40 % 585 887 5
30 % 657 1013 7
Entity #2 | Chains: B
Ubiquinol-cytochrome C reductase complex core protein 2 protein, length: 352 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 5492
95 % 6 8 6152 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 6 8 6137
70 % 6 8 5981
50 % 6 8 5598
40 % 6 8 5247
30 % 6 8 4716
Entity #3 | Chains: C
cytochrome b protein, length: 385 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 11443
95 % 6 8 6132 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 6 8 6122
70 % 6 8 5968
50 % 11 54 609
40 % 12 62 458
30 % 12 62 459
Entity #4 | Chains: D
Cytochrome c1, heme protein protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 5559
95 % 6 8 6216 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 6 8 6198
70 % 6 8 6051
50 % 11 51 654
40 % 11 51 685
30 % 12 59 479
Entity #5 | Chains: E
Ubiquinol-cytochrome C reductase iron-sulfur subunit protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 5621
95 % 6 8 6275 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 6 8 6259
70 % 6 8 6101
50 % 11 49 720
40 % 12 57 498
30 % 12 57 499
Entity #6 | Chains: F
Ubiquinol-cytochrome C reductase complex 17 kDa protein protein, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 10612
95 % 4 6 10606 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 4 6 10471
70 % 4 6 9921
50 % 4 6 8989
40 % 4 6 8232
30 % 4 6 7244
Entity #7 | Chains: G
Ubiquinol-cytochrome C reductase complex 14 kDa protein protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 5681
95 % 6 8 6332 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 6 8 6316
70 % 6 8 6153
50 % 6 8 5749
40 % 6 8 5380
30 % 6 8 4837
Entity #8 | Chains: H
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 5718
95 % 6 8 6361 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 6 8 6343
70 % 6 8 6175
50 % 6 8 5769
40 % 6 8 5396
30 % 6 8 4857
Entity #9 | Chains: I
Ubiquinol-cytochrome C reductase complex 7.3 kDa protein protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 23913
95 % 3 5 13172 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 3 5 12966
70 % 3 5 12166
50 % 3 5 10864
40 % 3 5 9860
30 % 3 5 8590

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.