Sequence Similarity Clusters for the Entities in PDB 1P84

Entity #1 | Chains: A
Ubiquinol-cytochrome C reductase complex core protein I protein, length: 431 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 6649
95 % 6 8 6679 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 6 8 6666
70 % 6 8 6460
50 % 6 8 6024
40 % 6 8 5600
30 % 11 62 600
Entity #10 | Chains: J
Heavy Chain (Vh) Of Fv-Fragment protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 6584
95 % 6 8 6735 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 6 8 6720
70 % 53 76 543
50 % 396 609 6
40 % 3386 5756 1
30 % 4165 7175 1
Entity #11 | Chains: K
Light Chain (Vl) Of Fv-Fragment protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 6683
95 % 6 8 6734 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 6 8 6719
70 % 137 215 66
50 % 198 317 23
40 % 235 361 27
30 % 4166 7175 1
Entity #2 | Chains: B
Ubiquinol-cytochrome C reductase complex core protein 2 protein, length: 352 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 6526
95 % 6 8 6680 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 6 8 6667
70 % 6 8 6461
50 % 6 8 6025
40 % 6 8 5601
30 % 6 8 4933
Entity #3 | Chains: C
cytochrome b protein, length: 385 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 14742
95 % 6 8 6798 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 6 8 6787
70 % 6 8 6583
50 % 11 61 557
40 % 12 69 451
30 % 12 69 464
Entity #4 | Chains: D
Cytochrome c1, heme protein protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 6527
95 % 6 8 6681 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 6 8 6668
70 % 6 8 6462
50 % 11 54 643
40 % 12 61 512
30 % 12 61 507
Entity #5 | Chains: E
Ubiquinol-cytochrome C reductase iron-sulfur subunit protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 6676
95 % 6 8 6824 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 6 8 6808
70 % 6 8 6600
50 % 11 53 692
40 % 12 61 518
30 % 12 61 519
Entity #6 | Chains: F
Ubiquinol-cytochrome C reductase complex 17 kDa protein protein, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 11716
95 % 4 6 11324 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 4 6 11176
70 % 4 6 10560
50 % 4 6 9508
40 % 4 6 8614
30 % 4 6 7447
Entity #7 | Chains: G
Ubiquinol-cytochrome C reductase complex 14 kDa protein protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 6528
95 % 6 8 6682 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 6 8 6669
70 % 6 8 6463
50 % 6 8 6026
40 % 6 8 5602
30 % 6 8 4934
Entity #8 | Chains: H
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 6525
95 % 6 8 6796 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 6 8 6786
70 % 6 8 6581
50 % 6 8 6138
40 % 6 8 5599
30 % 6 8 4932
Entity #9 | Chains: I
Ubiquinol-cytochrome C reductase complex 7.3 kDa protein protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 29106
95 % 3 5 13707 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 3 5 13467
70 % 3 5 11820
50 % 3 5 10546
40 % 3 5 9513
30 % 3 5 8150

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures