Sequence Similarity Clusters for the Entities in PDB 1P84

Entity #1 | Chains: A
Ubiquinol-cytochrome C reductase complex core protein I protein, length: 431 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 8028
95 % 6 8 6289 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 6 8 6281
70 % 6 8 6128
50 % 6 8 5727
40 % 6 8 5379
30 % 11 58 602
Entity #10 | Chains: J
Heavy Chain (Vh) Of Fv-Fragment protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 5851
95 % 6 8 6511 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 6 8 6493
70 % 32 39 1108
50 % 382 580 7
40 % 616 933 5
30 % 690 1061 7
Entity #11 | Chains: K
Light Chain (Vl) Of Fv-Fragment protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 5878
95 % 6 8 6533 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 6 8 6512
70 % 125 191 72
50 % 198 308 21
40 % 617 933 5
30 % 691 1061 7
Entity #2 | Chains: B
Ubiquinol-cytochrome C reductase complex core protein 2 protein, length: 352 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 5667
95 % 6 8 6332 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 6 8 6317
70 % 6 8 6159
50 % 6 8 5762
40 % 6 8 5404
30 % 6 8 4853
Entity #3 | Chains: C
cytochrome b protein, length: 385 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 11788
95 % 6 8 6311 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 6 8 6301
70 % 6 8 6145
50 % 11 57 581
40 % 12 65 450
30 % 12 65 449
Entity #4 | Chains: D
Cytochrome c1, heme protein protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 5734
95 % 6 8 6396 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 6 8 6379
70 % 6 8 6231
50 % 11 54 618
40 % 11 54 651
30 % 12 62 470
Entity #5 | Chains: E
Ubiquinol-cytochrome C reductase iron-sulfur subunit protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 5798
95 % 6 8 6455 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 6 8 6436
70 % 6 8 6282
50 % 11 52 669
40 % 12 60 494
30 % 12 60 492
Entity #6 | Chains: F
Ubiquinol-cytochrome C reductase complex 17 kDa protein protein, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 10919
95 % 4 6 10908 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 4 6 10762
70 % 4 6 10215
50 % 4 6 9247
40 % 4 6 8460
30 % 4 6 7449
Entity #7 | Chains: G
Ubiquinol-cytochrome C reductase complex 14 kDa protein protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 5853
95 % 6 8 6513 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 6 8 6495
70 % 6 8 6340
50 % 6 8 5920
40 % 6 8 5546
30 % 6 8 4978
Entity #8 | Chains: H
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 5889
95 % 6 8 6543 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 6 8 6522
70 % 6 8 6366
50 % 6 8 5943
40 % 6 8 5565
30 % 6 8 5001
Entity #9 | Chains: I
Ubiquinol-cytochrome C reductase complex 7.3 kDa protein protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 24631
95 % 3 5 13549 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 3 5 13335
70 % 3 5 12538
50 % 3 5 11181
40 % 3 5 10144
30 % 3 5 8845

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures