Sequence Similarity Clusters for the Entities in PDB 1P7Q

Entity #1 | Chains: A
HLA class I histocompatibility antigen, A-2 alpha chain protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 193 197 52
95 % 242 246 58 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 283 287 36
70 % 665 681 7
50 % 667 686 6
40 % 714 736 10
30 % 825 853 15
Entity #2 | Chains: B
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 569 590 2
95 % 611 633 3
90 % 620 642 4
70 % 843 872 4
50 % 863 894 4
40 % 863 894 8
30 % 863 894 14
Entity #3 | Chains: C
POL polyprotein protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
leukocyte immunoglobulin-like receptor 1 protein, length: 197 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 12704
95 % 7 7 7608 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.6
PDBFlex
90 % 7 7 7560
70 % 10 10 4901
50 % 12 12 4107
40 % 24 24 1613
30 % 30 31 1218

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.