Sequence Similarity Clusters for the Entities in PDB 1P7Q

Entity #1 | Chains: A
HLA class I histocompatibility antigen, A-2 alpha chain protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 200 204 52
95 % 251 255 57 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 304 308 35
70 % 708 727 6
50 % 710 732 6
40 % 758 783 10
30 % 876 907 15
Entity #2 | Chains: B
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 599 624 2
95 % 642 668 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 651 677 4
70 % 889 922 4
50 % 909 944 3
40 % 909 944 7
30 % 909 944 12
Entity #3 | Chains: C
POL polyprotein protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
leukocyte immunoglobulin-like receptor 1 protein, length: 197 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 13299
95 % 7 7 7963 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.7
PDBFlex
90 % 7 7 7903
70 % 10 10 5148
50 % 12 12 4282
40 % 24 24 1687
30 % 30 31 1265

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures