Sequence Similarity Clusters for the Entities in PDB 1P7D

Entity #1 | Chains: C,E
5'-D(*CP*AP*AP*TP*GP*CP*CP*AP*AP*CP*TP*TP*T)-3' dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D,F
26-MER dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
Integrase protein, length: 283 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 36074
95 % 2 2 16872 Flexibility: Medium
Max RMSD: 5.1, Avg RMSD: 3.4
PDBFlex
90 % 2 2 16529
70 % 2 2 15377
50 % 2 2 13468
40 % 2 2 12069
30 % 2 2 10364

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.