Sequence Similarity Clusters for the Entities in PDB 1P7D

Entity #1 | Chains: C,E
5'-D(*CP*AP*AP*TP*GP*CP*CP*AP*AP*CP*TP*TP*T)-3' dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D,F
26-MER dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
Integrase protein, length: 283 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37643
95 % 2 2 17627 Flexibility: Medium
Max RMSD: 5.1, Avg RMSD: 3.4
PDBFlex
90 % 2 2 17277
70 % 2 2 16067
50 % 2 2 14035
40 % 2 2 12571
30 % 2 2 10806

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures