Sequence Similarity Clusters for the Entities in PDB 1P5W

Entity #1 | Chains: B
5'-D(P*(3DR)P*TP*AP*CP*CP*TP*CP*TP*TP*GP*C)-3' dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
Coat protein VP2 protein, length: 548 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 16789
95 % 4 13 1366 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 4 13 1390
70 % 4 13 1413
50 % 4 20 521
40 % 4 20 566
30 % 4 23 209

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures

ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2CAS 1 A CANINE PARVOVIRUS EMPTY CAPSID (STRAIN D) VIRAL PROTEIN 2 1511906
2 1C8D 1 A CANINE PARVOVIRUS CAPSID CAPSID OF CANINE PARVOVIRUS STRAIN D - EMPTY CAPSID 1511906
3 4QYK 1 A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, a, b, c, d Capsid protein VP1 UNP residues 154-737 1511906
4 1P5W 2 A Coat protein VP2 sequence database residues 190-737 1511906
5 1C8G 1 A FELINE PANLEUKOPENIA VIRUS CAPSID 1511906
6 4DPV 2 Z PROTEIN (PARVOVIRUS COAT PROTEIN) 1511906
7 1P5Y 1 A Coat protein VP2 SEQUENCE DATABASE RESIDUES 190-737 1511906
8 1C8F 1 A FELINE PANLEUKOPENIA VIRUS CAPSID 1511906
9 1C8E 1 A FELINE PANLEUKOPENIA VIRUS CAPSID 10785
10 1C8H 1 A CANINE PARVOVIRUS CAPSID 1511906
11 1Z14 1 A VP2 1511908
12 1K3V 1 A capsid protein VP2 1511910
13 4ZPY 1 A VP1 protein 1511908
14 1Z1C 3 A Coat protein VP2 1511908
15 2XGK 1 A COAT PROTEIN VP2 1511908
16 6B9Q 1 1, 2, 3, 4, 5, 6, 7, 8, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, q, r, s, t, u, v, w, x, y, z Capsid protein VP2 1511908
17 3JCX 1 A Capsid protein 2 1511906
18 1IJS 3 P PROTEIN (PARVOVIRUS COAT PROTEIN) 1511906
19 1MVM 1 A PROTEIN (MURINE MINUTE VIRUS COAT PROTEIN) 1511908
20 1FPV 1 A FELINE PANLEUKOPENIA VIRUS (STRAIN B) VIRAL PROTEIN 2 1511906