Sequence Similarity Clusters for the Entities in PDB 1P5W

Entity #1 | Chains: B
5'-D(P*(3DR)P*TP*AP*CP*CP*TP*CP*TP*TP*GP*C)-3' dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
Coat protein VP2 protein, length: 548 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 52827
95 % 4 13 1268 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 4 13 1293
70 % 4 13 1323
50 % 4 20 495
40 % 4 20 536
30 % 4 23 189

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2CAS 1 A CANINE PARVOVIRUS EMPTY CAPSID (STRAIN D) VIRAL PROTEIN 2 1511906
2 1C8D 1 A CANINE PARVOVIRUS CAPSID CAPSID OF CANINE PARVOVIRUS STRAIN D - EMPTY CAPSID 1511906
3 4QYK 1 A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, a, b, c, d Capsid protein VP1 UNP residues 154-737 1511906
4 1P5W 2 A Coat protein VP2 sequence database residues 190-737 1511906
5 1C8G 1 A FELINE PANLEUKOPENIA VIRUS CAPSID 1511906
6 4DPV 2 Z PROTEIN (PARVOVIRUS COAT PROTEIN) 1511906
7 1P5Y 1 A Coat protein VP2 SEQUENCE DATABASE RESIDUES 190-737 1511906
8 1C8F 1 A FELINE PANLEUKOPENIA VIRUS CAPSID 1511906
9 1C8E 1 A FELINE PANLEUKOPENIA VIRUS CAPSID 10785
10 1C8H 1 A CANINE PARVOVIRUS CAPSID 1511906
11 1Z14 1 A VP2 1511908
12 1K3V 1 A capsid protein VP2 1511910
13 4ZPY 1 A VP1 protein 1511908
14 1Z1C 3 A Coat protein VP2 1511908
15 2XGK 1 A COAT PROTEIN VP2 1511908
16 6B9Q 1 1, 2, 3, 4, 5, 6, 7, 8, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, q, r, s, t, u, v, w, x, y, z Capsid protein VP2 1511908
17 3JCX 1 A Capsid protein 2 1511906
18 1IJS 3 P PROTEIN (PARVOVIRUS COAT PROTEIN) 1511906
19 1MVM 1 A PROTEIN (MURINE MINUTE VIRUS COAT PROTEIN) 1511908
20 1FPV 1 A FELINE PANLEUKOPENIA VIRUS (STRAIN B) VIRAL PROTEIN 2 1511906