Sequence Similarity Clusters for the Entities in PDB 1P5V

Entity #1 | Chains: A
Chaperone protein Caf1M protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 8 3641
95 % 1 10 3736 Flexibility: Low
Max RMSD: 4.5, Avg RMSD: 2.2
PDBFlex
90 % 2 11 3342
70 % 2 11 3306
50 % 2 11 3222
40 % 2 14 2038
30 % 4 42 595
Entity #2 | Chains: B
F1 capsule antigen protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 10 2900
95 % 1 10 3600 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 1.2
PDBFlex
90 % 1 10 3653
70 % 1 10 3602
50 % 1 10 3505
40 % 1 10 3389
30 % 1 10 3164

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.