Sequence Similarity Clusters for the Entities in PDB 1P5V

Entity #1 | Chains: A
Chaperone protein Caf1M protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 8 3702
95 % 1 10 3799 Flexibility: Low
Max RMSD: 4.5, Avg RMSD: 2.2
PDBFlex
90 % 2 11 3395
70 % 2 11 3355
50 % 2 11 3267
40 % 2 14 2075
30 % 4 42 602
Entity #2 | Chains: B
F1 capsule antigen protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 10 2961
95 % 1 10 3663 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 1.2
PDBFlex
90 % 1 10 3713
70 % 1 10 3657
50 % 1 10 3553
40 % 1 10 3427
30 % 1 10 3204

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures