Sequence Similarity Clusters for the Entities in PDB 1P5V

Entity #1 | Chains: A
Chaperone protein Caf1M protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 8 3796
95 % 1 10 3878 Flexibility: Low
Max RMSD: 4.5, Avg RMSD: 2.2
PDBFlex
90 % 2 11 3484
70 % 2 11 3440
50 % 2 11 3353
40 % 2 14 2125
30 % 4 42 611
Entity #2 | Chains: B
F1 capsule antigen protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 10 3027
95 % 1 10 3743 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 1.2
PDBFlex
90 % 1 10 3805
70 % 1 10 3751
50 % 1 10 3639
40 % 1 10 3506
30 % 1 10 3277

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures