Sequence Similarity Clusters for the Entities in PDB 1P5V

Entity #1 | Chains: A
Chaperone protein Caf1M protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 8 4450
95 % 1 10 3939 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 2.3
PDBFlex
90 % 2 11 3552
70 % 2 11 3496
50 % 2 11 3414
40 % 2 14 2150
30 % 4 43 620
Entity #2 | Chains: B
F1 capsule antigen protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 10 3467
95 % 1 10 3792 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 1 10 3866
70 % 1 10 3787
50 % 1 10 3687
40 % 1 10 3509
30 % 1 10 3223

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures