Sequence Similarity Clusters for the Entities in PDB 1P5U

Entity #1 | Chains: A
Chaperone protein Caf1M protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 8 4428
95 % 3 10 3923 Flexibility: Low
Max RMSD: 4.5, Avg RMSD: 2.2
PDBFlex
90 % 4 11 3534
70 % 4 11 3479
50 % 4 11 3397
40 % 5 14 2139
30 % 8 43 621
Entity #2 | Chains: B
F1 capsule antigen protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 10 3449
95 % 3 10 3777 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 1.2
PDBFlex
90 % 3 10 3848
70 % 3 10 3771
50 % 3 10 3672
40 % 3 10 3490
30 % 3 10 3212
Entity #3 | Chains: C
F1 capsule antigen protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 10 3449
95 % 4 10 3777 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 1.2
PDBFlex
90 % 4 10 3848
70 % 4 10 3771
50 % 4 10 3672
40 % 4 10 3490
30 % 4 10 3212

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures