Sequence Similarity Clusters for the Entities in PDB 1P5U

Entity #1 | Chains: A
Chaperone protein Caf1M protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 8 3515
95 % 3 10 3633 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.8
PDBFlex
90 % 4 11 3245
70 % 4 11 3213
50 % 4 11 3138
40 % 5 14 1986
30 % 8 42 580
Entity #2 | Chains: B
F1 capsule antigen protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 10 2805
95 % 3 10 3504 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 1.3
PDBFlex
90 % 3 10 3555
70 % 3 10 3500
50 % 3 10 3417
40 % 3 10 3305
30 % 3 10 3085
Entity #3 | Chains: C
F1 capsule antigen protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 10 2805
95 % 4 10 3504 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 1.3
PDBFlex
90 % 4 10 3555
70 % 4 10 3500
50 % 4 10 3417
40 % 4 10 3305
30 % 4 10 3085

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.