Sequence Similarity Clusters for the Entities in PDB 1P4L

Entity #1 | Chains: A
MHC CLASS I H-2KB HEAVY CHAIN protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 47 49 420
95 % 63 65 375 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 68 70 369
70 % 701 719 6
50 % 703 724 6
40 % 751 775 10
30 % 869 899 15
Entity #2 | Chains: B
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 90 219
95 % 223 228 60
90 % 223 228 65
70 % 884 916 4
50 % 904 938 3
40 % 904 938 7
30 % 904 938 12
Entity #3 | Chains: P
Ovalbumin peptide protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
LY49-C protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 45894
95 % 3 5 10775 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.5
PDBFlex
90 % 3 5 10625
70 % 3 5 10090
50 % 6 8 4926
40 % 6 8 4669
30 % 198 220 101

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures