Sequence Similarity Clusters for the Entities in PDB 1P4L

Entity #1 | Chains: A
MHC CLASS I H-2KB HEAVY CHAIN protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 47 49 397
95 % 63 65 355 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 68 70 355
70 % 672 687 6
50 % 674 692 6
40 % 721 742 10
30 % 832 859 15
Entity #2 | Chains: B
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 77 79 249
95 % 210 215 64 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.6
PDBFlex
90 % 210 215 68
70 % 850 878 4
50 % 870 900 3
40 % 870 900 8
30 % 870 900 14
Entity #3 | Chains: P
Ovalbumin peptide protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
LY49-C protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 44712
95 % 3 5 10497 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.6
PDBFlex
90 % 3 5 10356
70 % 3 5 9816
50 % 6 8 4798
40 % 6 8 4546
30 % 198 220 96

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.