Sequence Similarity Clusters for the Entities in PDB 1P4L

Entity #1 | Chains: A
MHC CLASS I H-2KB HEAVY CHAIN protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 49 302
95 % 63 65 328
90 % 68 70 328
70 % 616 630 7
50 % 618 635 7
40 % 657 677 11
30 % 768 793 14
Entity #2 | Chains: B
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 76 78 229
95 % 207 212 65
90 % 207 212 69
70 % 796 823 5
50 % 814 843 5
40 % 814 843 9
30 % 814 843 12
Entity #3 | Chains: P
Ovalbumin peptide protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
LY49-C protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 41846
95 % 3 5 9791
90 % 3 5 9666
70 % 3 5 9166
50 % 6 8 4473
40 % 6 8 4264
30 % 183 202 101

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.