Sequence Similarity Clusters for the Entities in PDB 1P4I

Entity #1 | Chains: L
ANTIBODY VARIABLE LIGHT CHAIN protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 45152
95 % 2 2 33932 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 2 2 32424
70 % 2 2 28905
50 % 2 2 24668
40 % 641 931 5
30 % 716 1059 7
Entity #2 | Chains: H
antibody variable heavy chain protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 67524
95 % 2 2 34383 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 2 2 32855
70 % 23 36 1256
50 % 397 578 7
40 % 642 931 5
30 % 717 1059 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.