Sequence Similarity Clusters for the Entities in PDB 1P4I

Entity #1 | Chains: L
ANTIBODY VARIABLE LIGHT CHAIN protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 45952
95 % 2 2 34472 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 2 2 32918
70 % 2 2 29326
50 % 2 2 25005
40 % 652 948 5
30 % 727 1077 7
Entity #2 | Chains: H
antibody variable heavy chain protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 68615
95 % 2 2 34929 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 2 2 33356
70 % 23 36 1276
50 % 408 594 7
40 % 653 948 5
30 % 728 1077 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures