Sequence Similarity Clusters for the Entities in PDB 1P4I

Entity #1 | Chains: L
ANTIBODY VARIABLE LIGHT CHAIN protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 44650
95 % 2 2 33560
90 % 2 2 32082
70 % 2 2 28638
50 % 2 2 24438
40 % 631 916 5
30 % 704 1042 7
Entity #2 | Chains: H
antibody variable heavy chain protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 66766
95 % 2 2 34005 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 2 2 32511
70 % 23 36 1238
50 % 389 566 7
40 % 632 916 5
30 % 705 1042 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.