Sequence Similarity Clusters for the Entities in PDB 1P4I

Entity #1 | Chains: L
ANTIBODY VARIABLE LIGHT CHAIN protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 43998
95 % 2 2 33065
90 % 2 2 31623
70 % 2 2 28288
50 % 2 2 24181
40 % 611 887 5
30 % 684 1013 7
Entity #2 | Chains: H
antibody variable heavy chain protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 65754
95 % 2 2 33509 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 2 2 32052
70 % 23 36 1224
50 % 370 540 8
40 % 612 887 5
30 % 685 1013 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.