Sequence Similarity Clusters for the Entities in PDB 1P4I

Entity #1 | Chains: L
ANTIBODY VARIABLE LIGHT CHAIN protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 46557
95 % 2 2 34915 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 2 2 33333
70 % 2 2 29684
50 % 2 2 25295
40 % 655 963 5
30 % 730 1093 7
Entity #2 | Chains: H
antibody variable heavy chain protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 69493
95 % 2 2 35376 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 2 2 33774
70 % 55 76 540
50 % 411 603 7
40 % 656 963 5
30 % 731 1093 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures