Sequence Similarity Clusters for the Entities in PDB 1P4E

Entity #1 | Chains: E,F
5'-D(*TP*AP*AP*GP*TP*TP*CP*CP*TP*AP*TP*TP*C)-3' dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: I,J
5'-D(*TP*TP*TP*AP*AP*AP*AP*GP*AP*AP*TP*AP*GP*GP*AP*AP*CP*TP*TP*C)-3' dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: G,H
33-MER dna, length: 33 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A,B
Recombinase FLP protein protein, length: 429 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 17985
95 % 1 5 5507 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.9
PDBFlex
90 % 1 5 5523
70 % 1 5 5443
50 % 1 5 5169
40 % 1 5 4879
30 % 1 5 4445
Entity #5 | Chains: C,D
Recombinase FLP protein protein, length: 429 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 17985
95 % 2 5 5507 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.9
PDBFlex
90 % 2 5 5523
70 % 2 5 5443
50 % 2 5 5169
40 % 2 5 4879
30 % 2 5 4445

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures