Sequence Similarity Clusters for the Entities in PDB 1P4E

Entity #1 | Chains: E,F
5'-D(*TP*AP*AP*GP*TP*TP*CP*CP*TP*AP*TP*TP*C)-3' dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: I,J
5'-D(*TP*TP*TP*AP*AP*AP*AP*GP*AP*AP*TP*AP*GP*GP*AP*AP*CP*TP*TP*C)-3' dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: G,H
33-MER dna, length: 33 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A,B
Recombinase FLP protein protein, length: 429 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 17429
95 % 1 5 5321
90 % 1 5 5330
70 % 1 5 5281
50 % 1 5 5023
40 % 1 5 4742
30 % 1 5 4328
Entity #5 | Chains: C,D
Recombinase FLP protein protein, length: 429 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 17429
95 % 2 5 5321
90 % 2 5 5330
70 % 2 5 5281
50 % 2 5 5023
40 % 2 5 4742
30 % 2 5 4328

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.