Sequence Similarity Clusters for the Entities in PDB 1P4D

Entity #1 | Chains: A,B,C
TraI protein protein, length: 330 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 24222
95 % 3 4 10006 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.4
PDBFlex
90 % 3 4 9884
70 % 3 4 9408
50 % 3 4 8537
40 % 10 13 2886
30 % 10 13 2658

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures