Sequence Similarity Clusters for the Entities in PDB 1P4B

Entity #1 | Chains: L
Antibody Variable light chain protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 46498
95 % 1 2 34870 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 2 33286
70 % 1 2 29640
50 % 1 2 25261
40 % 563 956 5
30 % 629 1085 7
Entity #2 | Chains: H
Antibody Variable heavy chain protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 69392
95 % 1 2 35331 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 1 2 33727
70 % 49 76 538
50 % 351 599 6
40 % 564 956 5
30 % 630 1085 7
Entity #3 | Chains: P
GCN4(7P-14P) peptide protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures