Sequence Similarity Clusters for the Entities in PDB 1P4B

Entity #1 | Chains: L
Antibody Variable light chain protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 40052
95 % 1 2 33894 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 2 32405
70 % 1 2 28880
50 % 1 2 24705
40 % 217 383 27
30 % 3812 7653 1
Entity #2 | Chains: H
Antibody Variable heavy chain protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 39984
95 % 1 2 33842 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 1 2 32354
70 % 49 76 578
50 % 371 659 6
40 % 3126 6175 1
30 % 3813 7653 1
Entity #3 | Chains: P
GCN4(7P-14P) peptide protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures