Sequence Similarity Clusters for the Entities in PDB 1P4B

Entity #1 | Chains: L
Antibody Variable light chain protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 44948
95 % 1 2 33774 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 2 32284
70 % 1 2 28799
50 % 1 2 24576
40 % 555 929 5
30 % 620 1056 7
Entity #2 | Chains: H
Antibody Variable heavy chain protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 67240
95 % 1 2 34225 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 1 2 32717
70 % 21 36 1250
50 % 342 576 7
40 % 556 929 5
30 % 621 1056 7
Entity #3 | Chains: P
GCN4(7P-14P) peptide protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.