Sequence Similarity Clusters for the Entities in PDB 1P4B

Entity #1 | Chains: L
Antibody Variable light chain protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 45621
95 % 1 2 34261 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 2 32729
70 % 1 2 29165
50 % 1 2 24887
40 % 558 936 5
30 % 624 1065 7
Entity #2 | Chains: H
Antibody Variable heavy chain protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 68148
95 % 1 2 34717 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 1 2 33166
70 % 21 36 1263
50 % 345 583 7
40 % 559 936 5
30 % 625 1065 7
Entity #3 | Chains: P
GCN4(7P-14P) peptide protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures