Sequence Similarity Clusters for the Entities in PDB 1P42

Entity #1 | Chains: A,B
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase protein, length: 270 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 17 1988
95 % 10 19 1980 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.4
PDBFlex
90 % 10 19 2019
70 % 10 19 2034
50 % 10 19 2068
40 % 10 19 2041
30 % 32 48 698

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures