Sequence Similarity Clusters for the Entities in PDB 1P3Q

Entity #1 | Chains: Q,R
Vacuolar protein sorting-associated protein VPS9 protein, length: 54 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 46397
95 % 1 1 34651
90 % 1 2 22795
70 % 1 2 20867
50 % 1 2 18142
40 % 1 2 16161
30 % 1 2 13865
Entity #2 | Chains: U,V
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 70 286 6
95 % 86 344 7
90 % 92 366 6
70 % 94 382 8
50 % 98 403 12
40 % 100 425 18
30 % 241 929 10

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.