Sequence Similarity Clusters for the Entities in PDB 1P3Q

Entity #1 | Chains: Q,R
Vacuolar protein sorting-associated protein VPS9 protein, length: 54 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49408
95 % 1 1 36896 Flexibility: Medium
Max RMSD: 5.3, Avg RMSD: 5.3
PDBFlex
90 % 1 2 24369
70 % 1 2 22152
50 % 1 2 19178
40 % 1 2 17071
30 % 1 2 14641
Entity #2 | Chains: U,V
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 78 321 4
95 % 103 396 5 Flexibility: Low
Max RMSD: 5.8, Avg RMSD: 1.1
PDBFlex
90 % 113 423 6
70 % 116 446 8
50 % 120 467 11
40 % 122 491 16
30 % 284 1044 9

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures