Sequence Similarity Clusters for the Entities in PDB 1P3Q

Entity #1 | Chains: Q,R
Vacuolar protein sorting-associated protein VPS9 protein, length: 54 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27632
95 % 1 2 24230 Flexibility: Medium
Max RMSD: 5.3, Avg RMSD: 5.3
PDBFlex
90 % 1 2 23427
70 % 1 2 21315
50 % 1 2 18332
40 % 1 2 16210
30 % 1 2 13581
Entity #2 | Chains: U,V
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 106 397 4
95 % 113 421 5 Flexibility: Low
Max RMSD: 5.8, Avg RMSD: 1.1
PDBFlex
90 % 121 434 6
70 % 126 467 8
50 % 130 488 10
40 % 133 515 15
30 % 158 673 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures