Sequence Similarity Clusters for the Entities in PDB 1P3Q

Entity #1 | Chains: Q,R
Vacuolar protein sorting-associated protein VPS9 protein, length: 54 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 29250
95 % 1 2 25624 Flexibility: Medium
Max RMSD: 6.0, Avg RMSD: 5.5
PDBFlex
90 % 1 2 24731
70 % 1 2 22393
50 % 1 2 19252
40 % 1 2 17004
30 % 1 2 14253
Entity #2 | Chains: U,V
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 113 423 4
95 % 120 447 5 Flexibility: Low
Max RMSD: 5.8, Avg RMSD: 1.1
PDBFlex
90 % 128 460 6
70 % 133 496 9
50 % 137 517 11
40 % 140 543 16
30 % 169 709 18

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures