Sequence Similarity Clusters for the Entities in PDB 1P3Q

Entity #1 | Chains: Q,R
Vacuolar protein sorting-associated protein VPS9 protein, length: 54 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28157
95 % 1 2 24667 Flexibility: Medium
Max RMSD: 5.3, Avg RMSD: 5.3
PDBFlex
90 % 1 2 23840
70 % 1 2 21670
50 % 1 2 18634
40 % 1 2 16456
30 % 1 2 13792
Entity #2 | Chains: U,V
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 110 412 4
95 % 117 436 5 Flexibility: Low
Max RMSD: 5.8, Avg RMSD: 1.1
PDBFlex
90 % 125 449 6
70 % 130 485 8
50 % 134 506 10
40 % 136 526 15
30 % 160 675 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures