Sequence Similarity Clusters for the Entities in PDB 1P3Q

Entity #1 | Chains: Q,R
Vacuolar protein sorting-associated protein VPS9 protein, length: 54 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28705
95 % 1 2 25160 Flexibility: Medium
Max RMSD: 6.0, Avg RMSD: 5.5
PDBFlex
90 % 1 2 24294
70 % 1 2 22011
50 % 1 2 18922
40 % 1 2 16709
30 % 1 2 14003
Entity #2 | Chains: U,V
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 110 413 4
95 % 117 437 5 Flexibility: Low
Max RMSD: 5.8, Avg RMSD: 1.1
PDBFlex
90 % 125 450 6
70 % 130 486 8
50 % 134 507 11
40 % 137 533 15
30 % 166 697 18

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures