Sequence Similarity Clusters for the Entities in PDB 1P3Q

Entity #1 | Chains: Q,R
Vacuolar protein sorting-associated protein VPS9 protein, length: 54 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48816
95 % 1 1 36468 Flexibility: Medium
Max RMSD: 5.3, Avg RMSD: 5.3
PDBFlex
90 % 1 2 24084
70 % 1 2 21916
50 % 1 2 18971
40 % 1 2 16891
30 % 1 2 14487
Entity #2 | Chains: U,V
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 78 318 4
95 % 101 391 5 Flexibility: Low
Max RMSD: 5.8, Avg RMSD: 1.1
PDBFlex
90 % 111 418 6
70 % 114 441 8
50 % 118 462 11
40 % 120 486 16
30 % 281 1038 9

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.