Sequence Similarity Clusters for the Entities in PDB 1P3P

Entity #1 | Chains: I,J
Palindromic 146bp Human Alpha-Satellite DNA fragment dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
Histone H3 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 5191
95 % 57 150 76 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 1.3
PDBFlex
90 % 57 153 77
70 % 57 154 96
50 % 58 157 131
40 % 58 157 146
30 % 58 157 161
Entity #3 | Chains: B,F
Histone H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45711
95 % 61 160 74 Flexibility: Low
Max RMSD: 13.3, Avg RMSD: 1.2
PDBFlex
90 % 62 165 75
70 % 62 165 87
50 % 62 165 123
40 % 62 165 140
30 % 62 165 155
Entity #4 | Chains: C,G
Histone H2A protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 24 74 166
95 % 50 140 86 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 0.5
PDBFlex
90 % 52 148 78
70 % 54 154 90
50 % 59 164 120
40 % 59 164 139
30 % 59 164 152
Entity #5 | Chains: D,H
Histone H2B protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 12 1941
95 % 49 135 111 Flexibility: Low
Max RMSD: 9.7, Avg RMSD: 0.5
PDBFlex
90 % 49 140 107
70 % 52 147 104
50 % 52 147 140
40 % 52 147 156
30 % 52 147 174

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.