Sequence Similarity Clusters for the Entities in PDB 1P3P

Entity #1 | Chains: I,J
Palindromic 146bp Human Alpha-Satellite DNA fragment dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
Histone H3 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 6 4855
95 % 52 137 105
90 % 52 140 105
70 % 52 141 116
50 % 53 144 139
40 % 53 144 156
30 % 53 144 173
Entity #3 | Chains: B,F
Histone H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 43133
95 % 56 147 77
90 % 57 152 74
70 % 57 152 89
50 % 57 152 127
40 % 57 152 146
30 % 57 152 160
Entity #4 | Chains: C,G
Histone H2A protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 70 157
95 % 44 125 111
90 % 47 134 107
70 % 49 140 97
50 % 54 150 123
40 % 54 150 140
30 % 54 150 154
Entity #5 | Chains: D,H
Histone H2B protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 12 1809
95 % 44 124 115
90 % 44 127 116
70 % 47 134 123
50 % 47 134 151
40 % 47 134 167
30 % 47 134 183

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.