Sequence Similarity Clusters for the Entities in PDB 1P3O

Entity #1 | Chains: I,J
Palindromic 146bp Human Alpha-Satellite DNA fragment dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
Histone H3 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 5073
95 % 79 149 76
90 % 79 152 78
70 % 80 153 96
50 % 82 156 131
40 % 82 156 145
30 % 82 156 160
Entity #3 | Chains: B,F
Histone H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 44965
95 % 85 159 73
90 % 86 164 74
70 % 86 164 87
50 % 86 164 122
40 % 86 164 139
30 % 86 164 155
Entity #4 | Chains: C,G
Histone H2A protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 74 164
95 % 71 139 86
90 % 75 147 80
70 % 77 153 88
50 % 82 163 117
40 % 82 163 138
30 % 82 163 150
Entity #5 | Chains: D,H
Histone H2B protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 12 1892
95 % 67 134 111
90 % 70 139 108
70 % 73 146 104
50 % 73 146 140
40 % 73 146 155
30 % 73 146 172

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.