Sequence Similarity Clusters for the Entities in PDB 1P3O

Entity #1 | Chains: I,J
Palindromic 146bp Human Alpha-Satellite DNA fragment dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
Histone H3 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 5403
95 % 85 160 77 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 1.2
PDBFlex
90 % 85 163 76
70 % 86 164 92
50 % 88 167 124
40 % 88 167 145
30 % 88 167 155
Entity #3 | Chains: B,F
Histone H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 47148
95 % 91 170 71 Flexibility: Low
Max RMSD: 13.3, Avg RMSD: 1.2
PDBFlex
90 % 92 175 69
70 % 92 175 83
50 % 92 175 116
40 % 92 175 139
30 % 92 175 144
Entity #4 | Chains: C,G
Histone H2A protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 40 79 161
95 % 77 150 81 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 0.6
PDBFlex
90 % 81 158 78
70 % 83 164 89
50 % 88 174 111
40 % 88 174 135
30 % 88 174 141
Entity #5 | Chains: D,H
Histone H2B protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 12 2029
95 % 73 146 84 Flexibility: Low
Max RMSD: 9.7, Avg RMSD: 0.5
PDBFlex
90 % 76 151 85
70 % 79 158 98
50 % 79 158 135
40 % 79 158 151
30 % 79 158 161

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.