Sequence Similarity Clusters for the Entities in PDB 1P3O

Entity #1 | Chains: I,J
Palindromic 146bp Human Alpha-Satellite DNA fragment dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
Histone H3 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 4844
95 % 73 137 105
90 % 73 140 105
70 % 74 141 116
50 % 76 144 139
40 % 76 144 156
30 % 76 144 173
Entity #3 | Chains: B,F
Histone H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 43057
95 % 79 147 76
90 % 80 152 74
70 % 80 152 88
50 % 80 152 127
40 % 80 152 145
30 % 80 152 159
Entity #4 | Chains: C,G
Histone H2A protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 70 157
95 % 64 125 111
90 % 68 134 107
70 % 70 140 97
50 % 75 150 123
40 % 75 150 140
30 % 75 150 154
Entity #5 | Chains: D,H
Histone H2B protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 12 1805
95 % 62 124 115
90 % 64 127 116
70 % 67 134 123
50 % 67 134 151
40 % 67 134 166
30 % 67 134 183

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.