Sequence Similarity Clusters for the Entities in PDB 1P3L

Entity #1 | Chains: I,J
Palindromic 146bp Human Alpha-Satellite DNA fragment dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
Histone H3 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 44375
95 % 41 151 76
90 % 41 154 78
70 % 41 155 93
50 % 41 158 128
40 % 41 158 145
30 % 41 158 160
Entity #3 | Chains: B,F
Histone H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 142 62
95 % 43 161 74
90 % 43 166 73
70 % 43 166 86
50 % 43 166 122
40 % 43 166 140
30 % 43 166 154
Entity #4 | Chains: C,G
Histone H2A protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 75 164
95 % 33 141 81
90 % 35 149 79
70 % 36 155 89
50 % 41 165 116
40 % 41 165 138
30 % 41 165 150
Entity #5 | Chains: D,H
Histone H2B protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 12 1976
95 % 33 136 108
90 % 33 141 91
70 % 35 148 100
50 % 35 148 139
40 % 35 148 156
30 % 35 148 172

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.