Sequence Similarity Clusters for the Entities in PDB 1P3L

Entity #1 | Chains: I,J
Palindromic 146bp Human Alpha-Satellite DNA fragment dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
Histone H3 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 42166
95 % 39 142 98
90 % 39 145 83
70 % 39 146 101
50 % 39 149 133
40 % 39 149 151
30 % 39 149 168
Entity #3 | Chains: B,F
Histone H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 133 81
95 % 41 152 71
90 % 41 157 73
70 % 41 157 86
50 % 41 157 124
40 % 41 157 141
30 % 41 157 157
Entity #4 | Chains: C,G
Histone H2A protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 70 161
95 % 30 128 110
90 % 33 139 87
70 % 34 145 94
50 % 39 155 120
40 % 39 155 139
30 % 39 155 154
Entity #5 | Chains: D,H
Histone H2B protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 12 1841
95 % 31 127 114
90 % 31 132 113
70 % 33 139 120
50 % 33 139 145
40 % 33 139 161
30 % 33 139 179

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.