Sequence Similarity Clusters for the Entities in PDB 1P3K

Entity #1 | Chains: I,J
Palindromic 146bp Human Alpha-Satellite DNA fragment dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
Histone H3 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 46554
95 % 94 168 76 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 1.2
PDBFlex
90 % 94 171 77
70 % 95 172 92
50 % 97 176 122
40 % 97 176 142
30 % 97 176 149
Entity #3 | Chains: B,F
Histone H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 89 161 55
95 % 101 180 68 Flexibility: Low
Max RMSD: 13.3, Avg RMSD: 1.2
PDBFlex
90 % 102 185 68
70 % 102 185 83
50 % 102 185 113
40 % 102 185 138
30 % 102 185 143
Entity #4 | Chains: C,G
Histone H2A protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 47 86 146
95 % 86 163 78 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 0.6
PDBFlex
90 % 90 171 74
70 % 92 177 87
50 % 98 187 107
40 % 98 187 130
30 % 98 187 138
Entity #5 | Chains: D,H
Histone H2B protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 12 2118
95 % 82 157 87 Flexibility: Low
Max RMSD: 9.7, Avg RMSD: 0.5
PDBFlex
90 % 85 162 84
70 % 88 169 98
50 % 88 169 132
40 % 88 169 148
30 % 88 169 159

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures