Sequence Similarity Clusters for the Entities in PDB 1P3K

Entity #1 | Chains: I,J
Palindromic 146bp Human Alpha-Satellite DNA fragment dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
Histone H3 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 41671
95 % 82 137 105
90 % 82 140 105
70 % 83 141 116
50 % 85 144 140
40 % 85 144 157
30 % 85 144 173
Entity #3 | Chains: B,F
Histone H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 77 128 86
95 % 89 147 78
90 % 90 152 74
70 % 90 152 91
50 % 90 152 128
40 % 90 152 146
30 % 90 152 160
Entity #4 | Chains: C,G
Histone H2A protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 70 161
95 % 73 125 111
90 % 77 134 107
70 % 79 140 99
50 % 85 150 124
40 % 85 150 141
30 % 85 150 155
Entity #5 | Chains: D,H
Histone H2B protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 12 1826
95 % 71 124 116
90 % 73 127 116
70 % 76 134 124
50 % 76 134 154
40 % 76 134 170
30 % 76 134 186

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.