Sequence Similarity Clusters for the Entities in PDB 1P3F

Entity #1 | Chains: I,J
Palindromic 146bp Human Alpha-Satellite DNA fragment dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
Histone H3 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 6 5263
95 % 88 150 77
90 % 88 153 78
70 % 89 154 96
50 % 91 157 132
40 % 91 157 148
30 % 91 157 162
Entity #3 | Chains: B,F
Histone H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 46246
95 % 95 160 75
90 % 96 165 76
70 % 96 165 87
50 % 96 165 125
40 % 96 165 141
30 % 96 165 157
Entity #4 | Chains: C,G
Histone H2A protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 74 166
95 % 80 140 94
90 % 84 148 79
70 % 86 154 92
50 % 92 164 121
40 % 92 164 139
30 % 92 164 153
Entity #5 | Chains: D,H
Histone H2B protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 12 1973
95 % 76 135 114
90 % 79 140 110
70 % 82 147 105
50 % 82 147 141
40 % 82 147 158
30 % 82 147 175

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.