Sequence Similarity Clusters for the Entities in PDB 1P3F

Entity #1 | Chains: I,J
Palindromic 146bp Human Alpha-Satellite DNA fragment dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
Histone H3 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 6 5001
95 % 86 143 92
90 % 86 146 85
70 % 87 147 103
50 % 89 150 137
40 % 89 150 153
30 % 89 150 169
Entity #3 | Chains: B,F
Histone H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 44376
95 % 93 153 74
90 % 94 158 75
70 % 94 158 90
50 % 94 158 128
40 % 94 158 143
30 % 94 158 158
Entity #4 | Chains: C,G
Histone H2A protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 70 167
95 % 76 129 114
90 % 81 140 86
70 % 83 146 95
50 % 89 156 122
40 % 89 156 140
30 % 89 156 155
Entity #5 | Chains: D,H
Histone H2B protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 12 1867
95 % 74 128 116
90 % 77 133 115
70 % 80 140 121
50 % 80 140 148
40 % 80 140 163
30 % 80 140 182

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.