Sequence Similarity Clusters for the Entities in PDB 1P3F

Entity #1 | Chains: I,J
Palindromic 146bp Human Alpha-Satellite DNA fragment dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
Histone H3 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 6 4855
95 % 81 137 105
90 % 81 140 105
70 % 82 141 116
50 % 84 144 139
40 % 84 144 156
30 % 84 144 173
Entity #3 | Chains: B,F
Histone H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 43129
95 % 88 147 77
90 % 89 152 74
70 % 89 152 89
50 % 89 152 127
40 % 89 152 146
30 % 89 152 160
Entity #4 | Chains: C,G
Histone H2A protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 70 157
95 % 72 125 111
90 % 76 134 107
70 % 78 140 97
50 % 84 150 123
40 % 84 150 140
30 % 84 150 154
Entity #5 | Chains: D,H
Histone H2B protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 12 1809
95 % 70 124 115
90 % 72 127 116
70 % 75 134 123
50 % 75 134 151
40 % 75 134 167
30 % 75 134 183

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.