Sequence Similarity Clusters for the Entities in PDB 1P3D

Entity #1 | Chains: A,B
UDP-N-acetylmuramate--alanine ligase protein, length: 475 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 8206
95 % 1 4 8666 Flexibility: Medium
Max RMSD: 7.8, Avg RMSD: 3.4
PDBFlex
90 % 1 4 8602
70 % 1 4 8264
50 % 1 7 4866
40 % 1 7 4609
30 % 1 8 3958

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures