Sequence Similarity Clusters for the Entities in PDB 1P3A

Entity #1 | Chains: I,J
Palindromic 146bp Human Alpha-Satellite DNA fragment dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
Histone H3 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 42777
95 % 90 147 80
90 % 90 150 79
70 % 91 151 98
50 % 93 154 134
40 % 93 154 149
30 % 93 154 165
Entity #3 | Chains: B,F
Histone H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 138 77
95 % 97 157 73
90 % 99 162 73
70 % 99 162 87
50 % 99 162 123
40 % 99 162 140
30 % 99 162 156
Entity #4 | Chains: C,G
Histone H2A protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 72 166
95 % 80 133 110
90 % 85 144 83
70 % 87 150 93
50 % 93 160 120
40 % 93 160 138
30 % 93 160 153
Entity #5 | Chains: D,H
Histone H2B protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 12 1875
95 % 78 132 113
90 % 81 137 111
70 % 84 144 106
50 % 84 144 143
40 % 84 144 159
30 % 84 144 178

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.