Sequence Similarity Clusters for the Entities in PDB 1P34

Entity #1 | Chains: I,J
Palindromic 146bp Human Alpha-Satellite DNA fragment dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
Histone H3 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 42499
95 % 62 143 92
90 % 62 146 85
70 % 63 147 103
50 % 64 150 137
40 % 64 150 153
30 % 64 150 169
Entity #3 | Chains: B,F
Histone H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 61 134 80
95 % 68 153 74
90 % 69 158 75
70 % 69 158 90
50 % 69 158 128
40 % 69 158 143
30 % 69 158 158
Entity #4 | Chains: C,G
Histone H2A protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 70 167
95 % 55 129 114
90 % 58 140 86
70 % 60 146 95
50 % 65 156 122
40 % 65 156 140
30 % 65 156 155
Entity #5 | Chains: D,H
Histone H2B protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 12 1867
95 % 55 128 116
90 % 55 133 115
70 % 58 140 121
50 % 58 140 148
40 % 58 140 163
30 % 58 140 182

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.