Sequence Similarity Clusters for the Entities in PDB 1P2C

Entity #1 | Chains: A,D
light chain anti-lysozyme antibody F10.6.6 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 21187
95 % 11 25 1874 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.7
PDBFlex
90 % 14 33 1303
70 % 539 2287 1
50 % 1112 4633 1
40 % 1112 4633 1
30 % 1234 5461 1
Entity #2 | Chains: B,E
heavy chain VH+CH1 anti-lysozyme antibody F10.6.6 protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40178
95 % 2 2 18276 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.8
PDBFlex
90 % 3 13 3156
70 % 538 2244 2
50 % 1113 4633 1
40 % 1113 4633 1
30 % 1235 5461 1
Entity #3 | Chains: C,F
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 514 655 3
95 % 564 708 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 574 725 5
70 % 771 942 7
50 % 775 950 8
40 % 794 984 11
30 % 794 984 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.