Sequence Similarity Clusters for the Entities in PDB 1P2C

Entity #1 | Chains: A,D
light chain anti-lysozyme antibody F10.6.6 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 23752
95 % 11 29 1637 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.7
PDBFlex
90 % 14 37 1200
70 % 570 2395 1
50 % 1175 4857 1
40 % 1391 5475 1
30 % 1687 6818 1
Entity #2 | Chains: B,E
heavy chain VH+CH1 anti-lysozyme antibody F10.6.6 protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 31426
95 % 2 2 21099 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.8
PDBFlex
90 % 3 13 3282
70 % 569 2355 2
50 % 1176 4857 1
40 % 1392 5475 1
30 % 1688 6818 1
Entity #3 | Chains: C,F
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 565 707 3
95 % 575 719 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 585 736 5
70 % 785 956 7
50 % 789 964 8
40 % 808 998 10
30 % 808 998 17

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures