Sequence Similarity Clusters for the Entities in PDB 1P2C

Entity #1 | Chains: A,D
light chain anti-lysozyme antibody F10.6.6 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 22252
95 % 12 31 1390 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.7
PDBFlex
90 % 15 39 1077
70 % 604 2479 1
50 % 1244 5021 1
40 % 1244 5021 1
30 % 1410 5951 1
Entity #2 | Chains: B,E
heavy chain VH+CH1 anti-lysozyme antibody F10.6.6 protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41918
95 % 2 2 19090 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.8
PDBFlex
90 % 3 13 3321
70 % 602 2429 2
50 % 1245 5021 1
40 % 1245 5021 1
30 % 1411 5951 1
Entity #3 | Chains: C,F
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 525 668 3
95 % 575 721 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 585 738 5
70 % 787 961 7
50 % 791 969 8
40 % 810 1003 11
30 % 810 1003 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures