Sequence Similarity Clusters for the Entities in PDB 1P2C

Entity #1 | Chains: A,D
light chain anti-lysozyme antibody F10.6.6 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 20570
95 % 11 25 1814 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.6
PDBFlex
90 % 14 33 1275
70 % 434 1828 2
50 % 1094 4501 1
40 % 1094 4501 1
30 % 1210 5303 1
Entity #2 | Chains: B,E
heavy chain VH+CH1 anti-lysozyme antibody F10.6.6 protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39086
95 % 2 2 17740 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.8
PDBFlex
90 % 3 13 3071
70 % 529 2178 1
50 % 1095 4501 1
40 % 1095 4501 1
30 % 1211 5303 1
Entity #3 | Chains: C,F
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 503 641 3
95 % 553 694 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 563 711 5
70 % 760 928 7
50 % 764 936 7
40 % 783 970 11
30 % 783 970 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.