Sequence Similarity Clusters for the Entities in PDB 1P27

Entity #1 | Chains: A,C
Mago nashi protein homolog protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 5814
95 % 1 7 6056 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.0
PDBFlex
90 % 3 11 3743
70 % 3 11 3669
50 % 3 11 3591
40 % 3 11 3428
30 % 3 11 3159
Entity #2 | Chains: B,D
RNA-binding protein 8A protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 38208
95 % 1 1 32375 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 31017
70 % 1 1 27775
50 % 2 2 18343
40 % 2 2 16220
30 % 2 2 13591

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures