Sequence Similarity Clusters for the Entities in PDB 1P27

Entity #1 | Chains: A,C
Mago nashi protein homolog protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 5375
95 % 1 7 6033 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.0
PDBFlex
90 % 3 11 3678
70 % 3 11 3624
50 % 3 11 3521
40 % 3 11 3402
30 % 3 11 3176
Entity #2 | Chains: B,D
RNA-binding protein 8A protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 46977
95 % 1 1 35156 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 33574
70 % 1 1 29859
50 % 2 2 18649
40 % 2 2 16615
30 % 2 2 14218

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures