Sequence Similarity Clusters for the Entities in PDB 1P22

Entity #1 | Chains: A
F-box/WD-repeat protein 1A protein, length: 435 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53774
95 % 1 1 44268
90 % 1 1 42107
70 % 1 1 37121
50 % 1 1 31504
40 % 1 1 27591
30 % 1 1 23039
Entity #2 | Chains: B
Skp1 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 53775
95 % 8 10 3245 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 8 10 3305
70 % 16 21 1793
50 % 28 38 739
40 % 28 38 776
30 % 28 38 774
Entity #3 | Chains: C
Beta-catenin protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 35750
95 % 1 2 30504
90 % 1 2 29263
70 % 1 2 26286
50 % 1 2 22532
40 % 1 2 19843
30 % 1 2 16589

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures