Sequence Similarity Clusters for the Entities in PDB 1P22

Entity #1 | Chains: A
F-box/WD-repeat protein 1A protein, length: 435 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54251
95 % 1 1 39647
90 % 1 1 37842
70 % 1 1 33620
50 % 1 1 28762
40 % 1 1 25445
30 % 1 1 21675
Entity #2 | Chains: B
Skp1 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 67332
95 % 8 10 3324 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 8 10 3368
70 % 16 21 1749
50 % 28 38 731
40 % 28 38 762
30 % 28 38 762
Entity #3 | Chains: C
Beta-catenin protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 50988
95 % 1 2 38098
90 % 1 2 36340
70 % 1 2 32299
50 % 1 2 27608
40 % 1 2 24418
30 % 1 2 20781

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures