Sequence Similarity Clusters for the Entities in PDB 1P1Z

Entity #1 | Chains: A
H-2 class I histocompatibility antigen, K-B alpha chain protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 49 49 405
95 % 65 65 360 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 70 70 363
70 % 697 705 6
50 % 699 710 6
40 % 748 761 10
30 % 865 881 15
Entity #2 | Chains: B
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 133 133 95
95 % 223 223 62 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 223 223 66
70 % 880 898 4
50 % 901 920 3
40 % 901 920 8
30 % 901 920 12
Entity #3 | Chains: P
Ovalbumin peptide protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
LY49-C antigen protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 67161
95 % 4 5 10645 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.4
PDBFlex
90 % 4 5 10505
70 % 4 5 9987
50 % 7 8 4859
40 % 7 8 4604
30 % 204 220 99

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.