Sequence Similarity Clusters for the Entities in PDB 1P1Z

Entity #1 | Chains: A
H-2 class I histocompatibility antigen, K-B alpha chain protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 49 49 435
95 % 65 65 414 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 70 70 389
70 % 728 736 6
50 % 739 750 6
40 % 779 792 10
30 % 907 923 15
Entity #2 | Chains: B
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 136 136 98
95 % 234 234 63 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 234 234 66
70 % 921 940 4
50 % 942 962 3
40 % 942 962 7
30 % 942 962 12
Entity #3 | Chains: P
Ovalbumin peptide protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
LY49-C antigen protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69896
95 % 4 5 11140
90 % 4 5 10987
70 % 4 5 10425
50 % 7 8 5079
40 % 7 8 4804
30 % 204 220 107

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures