Sequence Similarity Clusters for the Entities in PDB 1P1Z

Entity #1 | Chains: A
H-2 class I histocompatibility antigen, K-B alpha chain protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 49 374
95 % 65 65 348
90 % 70 70 353
70 % 671 679 6
50 % 673 684 6
40 % 721 734 10
30 % 835 851 15
Entity #2 | Chains: B
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 133 133 95
95 % 215 215 64
90 % 215 215 68
70 % 852 870 4
50 % 873 892 4
40 % 873 892 8
30 % 873 892 14
Entity #3 | Chains: P
Ovalbumin peptide protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
LY49-C antigen protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 65303
95 % 4 5 10303 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.8
PDBFlex
90 % 4 5 10165
70 % 4 5 9640
50 % 7 8 4695
40 % 7 8 4461
30 % 201 217 100

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.